Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55770 294 / 1e-102 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 287 / 8e-100 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT2G45800 251 / 4e-85 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT3G61230 243 / 4e-82 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT1G01780 242 / 6e-82 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT1G10200 204 / 6e-67 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040233 [exp] 375 / 1e-128 AT2G39910 386 / 6e-129 ARM repeat superfamily protein (.1) Lus10014781 [exp] 257 / 7e-88 AT1G01780 313 / 5e-110 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Lus10008476 [exp] 243 / 5e-82 AT3G61230 279 / 3e-96 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10000287 [exp] 240 / 9e-81 AT3G61230 271 / 5e-93 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10020687 [exp] 235 / 6e-79 AT3G61230 259 / 2e-88 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10029859 [exp] 234 / 1e-78 AT3G61230 268 / 9e-92 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 215 / 3e-71 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 215 / 3e-71 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10018674 [exp] 209 / 1e-68 AT1G10200 323 / 4e-114 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193800 [exp] 327 / 9e-116 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 321 / 2e-113 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.002G157300 [exp] 242 / 9e-82 AT1G01780 308 / 8e-108 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 240 / 5e-81 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 240 / 5e-81 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.003G124300 [exp] 239 / 9e-81 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 214 / 4e-71 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 212 / 4e-70 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.009G087200 [exp] 211 / 9e-70 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.002G118000 [exp] 210 / 2e-69 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10028257 pacid=23166390 polypeptide=Lus10028257 locus=Lus10028257.g ID=Lus10028257.BGIv1.0 annot-version=v1.0 ATGTCTTTTCTTGGTACACAGGAGAAATGCAAGGCTTGCGAGAAGACTGTGTACCCCATGGAACTTGTGTCTGCTGATGGCGTTCCGTATCACAAATCTT GCTTTAAGTGCTTCCATTGCAAAGGCACATTAAAGCTGGGAAATTACTCATCCATGGAAGGAGTGCTCTATTGTAAACCCCATTTTGAGCAGTTGTTCAA GGAGAGTGGTAATTACAACAAAAACTTCCTATCACCTGCAAAGTCAGCTGAGAAGTTAGGCCCTCAACTGGCTAAGTCACCAAGCAAAGCTGCCAGCATG TTTTCCGGGACACAGGATAAGTGTGCTACTTGTGGCAAAACTGCATATCCTCTTGAGAAGGTTACGGTGGAGAGCCTGGCATATCACAAGACATGCTTCA AGTGCGTTCACGGAGGCTGCTCCCTCTCCCCTTCAAACTACGCAGCACTTGAGGGAGTGCTCTACTGCAAGCATCATTTCTCCCAATTGTTCAAGGAGAA AGGTAGCTACAACCATGTTCTCGTCAAATCGGGGTCAGTAAGGCGACCAGCAAATGCAGTGGCAGCGGCAGCTGCAGCTACTGTTGCTGCTGTGCCAGTG CCAATGCCGGAGTCCTGA
AA sequence Show only first row Show all	>Lus10028257 pacid=23166390 polypeptide=Lus10028257 locus=Lus10028257.g ID=Lus10028257.BGIv1.0 annot-version=v1.0 MSFLGTQEKCKACEKTVYPMELVSADGVPYHKSCFKCFHCKGTLKLGNYSSMEGVLYCKPHFEQLFKESGNYNKNFLSPAKSAEKLGPQLAKSPSKAASM FSGTQDKCATCGKTAYPLEKVTVESLAYHKTCFKCVHGGCSLSPSNYAALEGVLYCKHHFSQLFKEKGSYNHVLVKSGSVRRPANAVAAAAAATVAAVPV PMPES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	0	1
AT1G12310			Calcium-binding EF-hand family...		Lus10032205 [exp]	1.0	0.8125
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	2.4	0.7016
AT3G10330			Cyclin-like family protein (.1...		Lus10031056 [exp]	8.9	0.6724
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	13.1	0.6918
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	13.9	0.7126
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	16.7	0.7024
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	17.7	0.7031
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	21.2	0.6943
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	24.5	0.7402
AT2G28310			Protein of unknown function (D...		Lus10016095 [exp]	24.7	0.6686

Compare expression of checked genes

Lus10028257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.