Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55780 392 / 1e-134 Glycosyl hydrolase superfamily protein (.1) AT3G61810 202 / 3e-61 Glycosyl hydrolase family 17 protein (.1) AT4G26830 184 / 2e-53 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 181 / 3e-52 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 175 / 1e-49 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 173 / 5e-49 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 166 / 3e-47 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G42720 160 / 6e-45 Glycosyl hydrolase family 17 protein (.1) AT4G14080 161 / 1e-44 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 158 / 9e-44 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040232 [exp] 694 / 0 AT3G55780 402 / 2e-138 Glycosyl hydrolase superfamily protein (.1) Lus10023245 [exp] 166 / 1e-46 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10038211 [exp] 166 / 2e-46 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004869 [exp] 159 / 8e-45 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 159 / 2e-44 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10015151 [exp] 157 / 2e-43 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10018306 [exp] 156 / 6e-43 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 155 / 9e-43 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031037 [exp] 152 / 2e-42 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193700 [exp] 435 / 6e-152 AT3G55780 425 / 2e-147 Glycosyl hydrolase superfamily protein (.1) Potri.002G261800 [exp] 167 / 5e-47 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 162 / 3e-45 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 161 / 6e-45 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G183800 [exp] 160 / 7e-45 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 160 / 1e-44 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G321900 [exp] 159 / 3e-44 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 158 / 6e-44 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182000 [exp] 158 / 7e-44 AT2G16230 506 / 2e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 157 / 7e-44 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10028258 pacid=23166515 polypeptide=Lus10028258 locus=Lus10028258.g ID=Lus10028258.BGIv1.0 annot-version=v1.0 ATGGATGCTCTGCGTCTCTCCTTCTACACTGTTCCGCTTCTCCTCCTCTGCCTTTCCTTCATCCATCCTCTCTCCCTTACTGCTCCGCCGTCCGCCTCCG TAATCGGCGTCACCTACACTCCCCCGATCACTTCCTCCTCATCAACCGGCGCCGGAAATGCTTCCCAGCCGCTTCCGCCTCAGAATCAAGAGCATCCGGA GGCGATTGCTTCTACAGTCACCGATCTCAACTTCGGCGCCGTCCGATTGCCGCATCCTGACCCCAACCTCATCAGAGCTTTCGGATTCACCGACATCACC GTACTCTTATCCATCCCCAACGTCCTCATACCGTCTCTGGCTTCCAATCGGACTCTGGCTCAGCGCTGGATTTACGTCCATGTGCTTCCATTCTTCCCCC GCACCAAGATCGCAATCATCTCCGTCGGAGTCGACGCTTTACCTGAGCTCAACTTGCTCCTCTCCGCGATCCAGAACGTTCATCTTGCCCTGCGAGATCT CGGAATCAAGAAGATCTCCGTCTCAACAACTTTCTCGTTCGTCAATCTCGTCACCACGGCGTTCCCGCCTTCGAGCGCGACTTTCAAAGAGACGATCGGC GGAATTTTGATGCGGCCGCTGCTCCAGTTCTTGGAGGACACGAACTCCTCGCTCTTAGTGAATCTGTATCCGTACAACGTGTACAGAATGCACTCTCAGA TCCCGCTTGGATTCGCGTTGTTCCAGGAGCACAATTTCAACTTCCGCGACGACGTGGTGACGGGAGTTCGGTACCGCAACTTGTTCGATATGATGGTGGA CTCCGTGGTCACTTCGATGGCCGTCGTCGGTCACGAGAATGTTCCGGTGATCATTGCTGAAACGGGCTGGCCGAGCTCCGGCGGGGAAGGCCCATTCGAG GCCGACGCCAATCCGGCGTACGCGGAGCTGTACTTGAGGTCGCTGGTTGCTCATCTGGTCACCGGAAGAGGTACGCCGCTGAGGAAAGAAGGCGTGTCAC AGGTTTACATCTACGAGTTGGTAGATCAAGAGGTGCACGAGCAAGGGACGCGTAATTGGGGAGTTCTGTACCCTAATATGAGCAGGAAGTACCACTTCGA CTTCTCTTCTGGTACTACCAGCATCACAATCAGTAAGGGGAAACTGCTTCTTCTGGGCATTGCTTCATTCATTCTGCTCTGTTCTTTGTGA
AA sequence Show only first row Show all	>Lus10028258 pacid=23166515 polypeptide=Lus10028258 locus=Lus10028258.g ID=Lus10028258.BGIv1.0 annot-version=v1.0 MDALRLSFYTVPLLLLCLSFIHPLSLTAPPSASVIGVTYTPPITSSSSTGAGNASQPLPPQNQEHPEAIASTVTDLNFGAVRLPHPDPNLIRAFGFTDIT VLLSIPNVLIPSLASNRTLAQRWIYVHVLPFFPRTKIAIISVGVDALPELNLLLSAIQNVHLALRDLGIKKISVSTTFSFVNLVTTAFPPSSATFKETIG GILMRPLLQFLEDTNSSLLVNLYPYNVYRMHSQIPLGFALFQEHNFNFRDDVVTGVRYRNLFDMMVDSVVTSMAVVGHENVPVIIAETGWPSSGGEGPFE ADANPAYAELYLRSLVAHLVTGRGTPLRKEGVSQVYIYELVDQEVHEQGTRNWGVLYPNMSRKYHFDFSSGTTSITISKGKLLLLGIASFILLCSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	0	1
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	4.5	0.8595
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	7.2	0.8206
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	10.7	0.8189
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10015772 [exp]	12.0	0.7968
AT5G49525			unknown protein		Lus10011181 [exp]	13.0	0.8075
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	13.4	0.8066
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	16.7	0.8151
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10036801 [exp]	27.4	0.7396
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	27.7	0.8123
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	28.2	0.8145

Compare expression of checked genes

Lus10028258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.