Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) AT4G29270 94 / 4e-22 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 87 / 1e-19 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 87 / 2e-19 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 86 / 2e-19 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 81 / 1e-17 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 78 / 2e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 77 / 5e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 67 / 1e-12 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 60 / 4e-10 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040231 [exp] 511 / 0 AT2G39920 200 / 1e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10002714 [exp] 405 / 1e-143 AT2G39920 180 / 7e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10023731 [exp] 89 / 3e-20 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 86 / 3e-19 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 74 / 4e-15 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 74 / 6e-15 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 73 / 2e-14 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 71 / 5e-14 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 71 / 5e-14 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193500 [exp] 288 / 2e-96 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Potri.002G257700 [exp] 90 / 7e-21 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 83 / 2e-18 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 79 / 9e-17 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 75 / 3e-15 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 74 / 5e-15 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 64 / 9e-12 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10028259 pacid=23166418 polypeptide=Lus10028259 locus=Lus10028259.g ID=Lus10028259.BGIv1.0 annot-version=v1.0 ATGAATAAATCATCATCTGGGGAAGAAGTAGACAGATGCGTTGAATCATCTGCTGCTGCTTCCTATGCACACCAGATGGAGAGGGAGTACTCTGCTGGAA GCCTCTCCACCGCTGAAGATTCCGAGAGGGGGAGCGGATACGTGACGGAGTCAGGATTCTACATGACATCATTCGCAGCAACCATATTCATTGCTCTCCT CGTAACAGTCGGAGTCTTGATGGTCAGCTTGCTCATACTGCTGACAGTTATGCTGCAAGCCTGCGAGAGCAGGAACAACGGTGTCGTCGAGATGCAAACA AAGCATAATGCTAATTACCACTACTGCAAGAGCTTTGCTATGCACGCGGAGCTCAACAACCTCCCTTTACTCGACTTCCCTCCAGTGTGCCAGGATCTTG CTACCAATAAAGTCGTCGAATATCAAAGAGACCTGACAACCAATCTGCGTTTCGTTGAAGAATACTTCGATAAGGTTGCGCCTTCTGGAGGTGAACGAGA TATAGTGTTGATCGATGCGGACAGCATTTTGATTTCCATTCCTCGTTTCGACCATTCCTTGACTAACAGCAAATCGCCAAACCATTCGCAACAAGTACGT CTCGTTAGACTGTACAAGAAGATTCAAACGAGTGGATGGATGCTGGTTTTGGCATCCAGGAATCCAGAAACACAAAGAAATGTTACTGTAGAGCAACTCA ATTCTGCAGGATACAGTGCCTGGTCATCATTGGTTCTGAGATCAGACGACGAAACGAAGATTCCTACAACGGAATACTTTTCGAGACGAAGGCTTGCATT AGAGGAACAAGGATTCTGGATAGCAGCGATAATTAGTAGTCAGATAGATGCACTGACAGGTCCAAGTCCAGCAACCCGCATCTTCAAGATTCCAAACCCA GAATACTACTTCGTACAAGATTCTAGAAGCTCAAATCTGCCTGGCGAAAACACATTTTCGCAATGA
AA sequence Show only first row Show all	>Lus10028259 pacid=23166418 polypeptide=Lus10028259 locus=Lus10028259.g ID=Lus10028259.BGIv1.0 annot-version=v1.0 MNKSSSGEEVDRCVESSAAASYAHQMEREYSAGSLSTAEDSERGSGYVTESGFYMTSFAATIFIALLVTVGVLMVSLLILLTVMLQACESRNNGVVEMQT KHNANYHYCKSFAMHAELNNLPLLDFPPVCQDLATNKVVEYQRDLTTNLRFVEEYFDKVAPSGGERDIVLIDADSILISIPRFDHSLTNSKSPNHSQQVR LVRLYKKIQTSGWMLVLASRNPETQRNVTVEQLNSAGYSAWSSLVLRSDDETKIPTTEYFSRRRLALEEQGFWIAAIISSQIDALTGPSPATRIFKIPNP EYYFVQDSRSSNLPGENTFSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	0	1
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	1.7	0.9550
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	2.0	0.9554
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	2.2	0.9529
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	3.0	0.9580
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	4.0	0.9458
AT4G28290			unknown protein		Lus10039825 [exp]	6.7	0.9464
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	7.3	0.9438
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	9.8	0.9545
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	10.0	0.9432
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	11.8	0.9513

Compare expression of checked genes

Lus10028259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.