Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36280 739 / 0 L-Aspartase-like family protein (.1.2) AT4G18440 734 / 0 L-Aspartase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040229 [exp] 960 / 0 AT1G36280 744 / 0.0 L-Aspartase-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193400 [exp] 825 / 0 AT1G36280 758 / 0.0 L-Aspartase-like family protein (.1.2) Potri.008G063800 [exp] 80 / 6e-16 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00206 [flax] [poplar] Lyase_1 Lyase PF08328 [flax] [poplar] ASL_C Adenylosuccinate lyase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10028260 pacid=23166534 polypeptide=Lus10028260 locus=Lus10028260.g ID=Lus10028260.BGIv1.0 annot-version=v1.0 ATGGACTTGGAAACACAGGTTCAATTCCCCCTTCGAATGCTTCATTCCCCTTCTCTTCGCCGTCTCCCTGCCGATCTTGCTCTTGCAGTGTCTCTGCGCC CAAGGAAAGCTGACGTTCGGGCGTTCGAGCTCTCAAATTTGACGGCGTTATCTCCTTTGGACGGGAGGTATTGGAGTAAAGTGAAGGACTTGTCTCCTTA CATGAGTGAATATGGTCTTATATTCTACCGGGTTCTTGTTGAGATTAAATGGCTGCTGAAGCTTTCACAGATTCCTGAAATCGATGAGGTCCCTGAGTTT AGTCAGAATGCTCAATTGTTTTTGGAAGAAGTCATTAGTGATTTTAGCCTGGATGATGCTTTAGAGGTTAAGAACATAGAGAGGGTGACTAATCATGATG TGAAAGCTGTGGAGTACTTTTTGAAGAAGAAATGCCAATCACATCCTGAGATTGTTAAGGTGCTCGAGTTTTTCCATTTTGCTTGCACCTCTGAGGATAT AAACAATCTTGCTCATGGACTGATGCTGAAAGAGTCACTGAATGGTGTCATTTTCCCTGTTATGGATGAATTGATCGAAGATATTTCCAGGATGGCTGGA CGATATGCTTCTATTCCTTTGCTTTCTCGCACCCATGGACAGCCAGCTTCGCCAACAACTCTGGGAAAGGAAATGGCCGTTTTTGCTGCGAGGTTAAGTG AACAAAAGCAAGAAATTTCGCAAGTGAAGATCAAAGGGAAGTTTGCTGGTGCAGTTGGGAACTACAATGCTCATATCAGTGCATATCCTAGCATTTACTG GCCTCAGATTGCTAAAGAGTTTGTCGAATCGCTTGGATTGGTATTCAATCCCTATGTCACTCAGATCGAGCCACATGATTATATGGCAAGGCTTTTCTAC GGAATCAGCCTGTTTAACACAATATTAATTGATTTTGATAGGGATGTTTGGGGGTATATATCCTATGGATACTTCAAGCAGATAACAAAAGCTGGTGAGA TTGGGTCCTCAACAATGCCTCACAAAGTAAACCCAATTGACTTTGAGAACAGCGAGGGTAATCTTGGGAAAGCCAACGGAAATTTCTCTCATCTGAGTGA GAAGTTGCCAATTTCACGTTTTCAGCGGGACTTGACTGATTCGACTGTTCTGAGGAATATGGGCGAAGGCTTGGGTCATTCTCTTTTGGCCTACAAGAGT ACATTGCAGGGAATTGGAAAACTTACGGTAAATGAAGCTCGTTTGGCTGAAGACTTGGACCAGTGGTGGGAGGTGCTTGCGGAACCAATCCAGACGGTGA TGCGACGATACGGTGTTCCAGAGCCTTATGAGAAGCTGAAAGAGCTAACAAGGGGAAGAGATGTTACGAAGGAGAGCATTCGAGAATTCATCGAAGGCCT GGAGTTGCCTCAAGATGCTAAATCCTACCTGTTGGAGCTGACACCCCACAACTACTTTGGAGCAGCTGTTGAACTGGCCAACTCTGGTGGTATCGTTACG AATGTGGTGAACGGAGTCAGAGCTCTATAG
AA sequence Show only first row Show all	>Lus10028260 pacid=23166534 polypeptide=Lus10028260 locus=Lus10028260.g ID=Lus10028260.BGIv1.0 annot-version=v1.0 MDLETQVQFPLRMLHSPSLRRLPADLALAVSLRPRKADVRAFELSNLTALSPLDGRYWSKVKDLSPYMSEYGLIFYRVLVEIKWLLKLSQIPEIDEVPEF SQNAQLFLEEVISDFSLDDALEVKNIERVTNHDVKAVEYFLKKKCQSHPEIVKVLEFFHFACTSEDINNLAHGLMLKESLNGVIFPVMDELIEDISRMAG RYASIPLLSRTHGQPASPTTLGKEMAVFAARLSEQKQEISQVKIKGKFAGAVGNYNAHISAYPSIYWPQIAKEFVESLGLVFNPYVTQIEPHDYMARLFY GISLFNTILIDFDRDVWGYISYGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGNFSHLSEKLPISRFQRDLTDSTVLRNMGEGLGHSLLAYKS TLQGIGKLTVNEARLAEDLDQWWEVLAEPIQTVMRRYGVPEPYEKLKELTRGRDVTKESIREFIEGLELPQDAKSYLLELTPHNYFGAAVELANSGGIVT NVVNGVRAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	2.6	0.9407
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	3.9	0.9393
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	11.7	0.9395
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	14.6	0.9382
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	17.5	0.9377
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	20.0	0.9148
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	20.8	0.9371
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	21.4	0.9271
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	21.9	0.8998
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	22.0	0.9301

Compare expression of checked genes

Lus10028260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.