Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55800 583 / 0 SBPASE sedoheptulose-bisphosphatase (.1) AT3G54050 98 / 3e-22 HCEF1 high cyclic electron flow 1 (.1.2) AT1G43670 96 / 6e-22 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT5G64380 73 / 7e-14 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040228 [exp] 686 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10018885 [exp] 99 / 5e-23 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 99 / 6e-23 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10035545 [exp] 92 / 3e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10027748 [exp] 92 / 3e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10021115 [exp] 89 / 3e-19 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10017195 [exp] 81 / 2e-16 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2) Lus10007061 [exp] 79 / 7e-16 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10020433 [exp] 69 / 1e-12 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063800 [exp] 625 / 0 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.010G193300 [exp] 622 / 0 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.005G191400 [exp] 99 / 4e-23 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G106900 [exp] 99 / 2e-22 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.002G069000 [exp] 94 / 2e-21 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G109000 [exp] 94 / 4e-21 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.017G042900 [exp] 71 / 4e-13 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00316 [flax] [poplar] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028261 pacid=23166493 polypeptide=Lus10028261 locus=Lus10028261.g ID=Lus10028261.BGIv1.0 annot-version=v1.0 ATGGCGACTGGTATAGCATGTACTATTCGTGGGGCTTTCATACCTTCTCAGCATGTAGTGTCTCCTTCATCCATTTCTCCTTCCTTCAGCTCCAGGAATC TGAAATCAAGCTCAATCTTTGGGGAATCATTGAAGTTGGTGCCAAGATCATCATCATCATCATTTAAGGTGTCCAAGGCAAAGAACTCTCCTCTTGTCAT CAGAAGTGAGATTGGTGATAGCCTGGAAGAGTTTTTGACAAAGGCAACGCCAGACAAAGGGCTTATTAGGGTGATGACTTGCATGGGAGAGGCAATTAGG ACAATTGGTTTCAAGGTTAGAACAGCTTCTTGTGGAGGAACTCAGTGTGTCAACTCCTTTGGTGATGAGCAGCTTGCTGTTGATATGCTTGCTGACAAGT TGCTCTTTGAGGCCTTGGAACACTCCCACTTCTGCAAGTATGCTTGTTCTGAGGAAGTCCCTGAGCTTCAAGACATGGGAGGACCTGTTGAAGGTGGATT CAGTGTTGCTTTTGATCCACTTGATGGATCCAGCATTGTGGACACCAATTTCTCTGTTGGTACTATCTTCGGAGTGTGGCCGGGGGACAAGCTAACCGGA GTCACTGGCAGGGATCAAGTGGCTGCTGCCATGGGGGTTTACGGCCCCCGAACCACTTATGTTCTTGCACTTAAGGACTATCCTGGAACTTATGAGTTCC TTCTTCTTGATGAAGGGAAGTGGCAACTTGTGAAGGAGACCAATGAAATCGGTGAAGGCAAACTTTTCTCACCTGGAAACTTGAGAGCAACTTTTGATAA TCCTGATTACGAGAAGCTGATTAACTACTATGTAAAAGAGAAGTACACCTTGAGATACACAGGAGGAATGGTGCCAGATGTCAATCAGATCATTGTAAAA GAGAAAGGCATCTTCACGAACGTGATATCCCCGACTACCAAAGCGAAGCTGAGGTTGTTGTTCGAAGTGGCTCCATTGGGGCTCTTAGTTGAGAATGCTG GAGGTTACAGCAGCGATGGACATCAGTCTGTTCTAGATAAGGTGATCAAGGAACTTGATGACAGAACTCAAGTTGCTTATGGCTCCAAGAACGAGATCAT CCGATTCGAAGAGACTCTTTACGGGAAATCTAGGCTTAAGGAAGCTGGAGGTGTTCCAGTTGGAGCTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10028261 pacid=23166493 polypeptide=Lus10028261 locus=Lus10028261.g ID=Lus10028261.BGIv1.0 annot-version=v1.0 MATGIACTIRGAFIPSQHVVSPSSISPSFSSRNLKSSSIFGESLKLVPRSSSSSFKVSKAKNSPLVIRSEIGDSLEEFLTKATPDKGLIRVMTCMGEAIR TIGFKVRTASCGGTQCVNSFGDEQLAVDMLADKLLFEALEHSHFCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFSVGTIFGVWPGDKLTG VTGRDQVAAAMGVYGPRTTYVLALKDYPGTYEFLLLDEGKWQLVKETNEIGEGKLFSPGNLRATFDNPDYEKLINYYVKEKYTLRYTGGMVPDVNQIIVK EKGIFTNVISPTTKAKLRLLFEVAPLGLLVENAGGYSSDGHQSVLDKVIKELDDRTQVAYGSKNEIIRFEETLYGKSRLKEAGGVPVGAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	0	1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	1.0	0.9946
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	2.0	0.9737
AT4G01150			unknown protein		Lus10003031 [exp]	2.6	0.9652
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	3.0	0.9725
					Lus10005720 [exp]	3.5	0.9663
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	3.5	0.9675
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	4.9	0.9639
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	6.3	0.9663
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10005199 [exp]	6.3	0.9608
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	7.4	0.9578

Compare expression of checked genes

Lus10028261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.