Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT4G32870 57 / 2e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040227 [exp] 328 / 1e-116 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10005477 [exp] 77 / 6e-18 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10006042 [exp] 63 / 9e-13 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10000573 [exp] 53 / 6e-09 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10026898 [exp] 52 / 1e-08 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G063900 [exp] 234 / 5e-80 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G193200 [exp] 151 / 4e-48 AT2G25770 59 / 4e-12 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.018G046100 [exp] 67 / 2e-14 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G237000 [exp] 62 / 2e-12 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G236800 [exp] 58 / 1e-10 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 54 / 1e-09 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10028262 pacid=23166419 polypeptide=Lus10028262 locus=Lus10028262.g ID=Lus10028262.BGIv1.0 annot-version=v1.0 ATGGAACTCGGATCCGGAGACTCGAAATGGCGTGGAAGCGTGAGGGCGATCGTGGAAGCACCTATAGACCAAGTCTGGACCATGGTTTCACAGACCAAGA GACTACCAGACTGGGTCCCAATGGTTGAAAGGTGCACAGACCTGGCTGGACAAGAAGGCCAAGTAGGCTATGTCCGGTTAGTGTCCGGGTTTATGTTCCC TCAAGAAGACGGCGAAAGGTCTTGGATCAAGGAGAAGTTGATCTCCATGGACTCATCATGCTACAGCTATGAATACAAGATGGAAGCCAGTAATGTCGGC TTGGATGGCTCCGCGAACAAGCTCAAGCTTGTCGATTATGGGAACAGATCGACTTTGGTCGTGTGGTCGTTCGAGATAGACCCTTTGCCTGGTGCCTCTC AGGATTACATTATAGACTTTTTGGGTTATGTTTACAAATCTTCCATTGGTAGGATTGGTAGTGCCATTCAAGAAGAAAAAGAGAATGGTTCTTGA
AA sequence Show only first row Show all	>Lus10028262 pacid=23166419 polypeptide=Lus10028262 locus=Lus10028262.g ID=Lus10028262.BGIv1.0 annot-version=v1.0 MELGSGDSKWRGSVRAIVEAPIDQVWTMVSQTKRLPDWVPMVERCTDLAGQEGQVGYVRLVSGFMFPQEDGERSWIKEKLISMDSSCYSYEYKMEASNVG LDGSANKLKLVDYGNRSTLVVWSFEIDPLPGASQDYIIDFLGYVYKSSIGRIGSAIQEEKENGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	1.7	0.9039
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	2.4	0.8905
					Lus10033722 [exp]	3.6	0.8381
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	3.9	0.8778
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	6.9	0.8842
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	8.0	0.9001
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	8.0	0.8341
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	9.2	0.8377
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	10.7	0.8770
					Lus10018716 [exp]	11.2	0.8154

Compare expression of checked genes

Lus10028262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.