Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39940 793 / 0 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G03190 312 / 1e-98 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT1G12820 293 / 2e-91 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 278 / 2e-85 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT3G26810 276 / 8e-85 AFB2 auxin signaling F-box 2 (.1) AT5G49980 274 / 8e-84 AFB5 auxin F-box protein 5 (.1) AT4G24390 268 / 1e-81 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT4G15475 64 / 1e-10 F-box/RNI-like superfamily protein (.1) AT2G25490 57 / 3e-08 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 50 / 2e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040224 [exp] 1140 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10014836 [exp] 991 / 0 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10009883 [exp] 556 / 0 AT2G39940 480 / 4e-165 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10020086 [exp] 289 / 9e-90 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 288 / 2e-89 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 287 / 3e-87 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 267 / 2e-81 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 256 / 2e-77 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011262 [exp] 255 / 6e-77 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192900 [exp] 863 / 0 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.008G064400 [exp] 853 / 0 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.004G033900 [exp] 294 / 1e-91 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 288 / 3e-89 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 281 / 5e-86 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G207800 [exp] 278 / 1e-85 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 276 / 6e-85 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 275 / 1e-84 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.017G061600 [exp] 274 / 4e-84 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.002G102700 [exp] 272 / 8e-83 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028265 pacid=23166468 polypeptide=Lus10028265 locus=Lus10028265.g ID=Lus10028265.BGIv1.0 annot-version=v1.0 ATGGAAGAGAATCAAAACAACGGGAAGGTCAGCAGAACAGATAGCTTCAGCGGGGGAGGAGGAGGAGTGGTCGCCGACGACGTCGTTTTCGGGTGCGTGC TGCCGTACATCCACGACGTTCGGGACAGGGAGGTGGTGTCGCTGGTCTGCAGGAGCTGGTACGAGCTGGAGGCTCTGACGAGGAAGCACGTGACGATTGC GCTCTGCTACACGGCGAGTCCGGATCGGCTGCGGCGGAGGTTCAGCCACTTAGAGTCGTTGAAGCTGAAGGGGAAGCCGCGTGCCGCCATGTTCAACCTC ATCCCGGACGATTGGGGGGGCTACGTCACGCCGTGGGTGAAGGAGATAGCGGATTCCTTCACCTGCTTGAAATCGGTTCACTTCAGGCGGATGATTGTGT GGGATTCGGATCTGGAGCTCCTCGCCAGGTCTCGTGGCGAGGCCTTGCAGCACTTGAAGCTCGACAAGTGCTCCGGATTCTCCACCGATGGCCTTCTTCA CGTCACTCGTTGTTGCAGGCAATTGAGGACGTTGTTTATGGAAGAGAGCATTATCGTAGAAAATGATGGTGACTGGCTCCACGAGATTGCAGCACATAAT AGCGTCCTTGAGGCTCTGAACTTCTACATGATAGACTTAGCCGAAGTGAAGGTTGAAGACCTTGAGCTCATAGCGGAAAACTGCCGATCTTTGACCTCAG TAAAGATTAATGACTGTGAAATCCTGGATCTTATCGGCTTCTTCAAATCTGCTTCTTCCTTGGAAGAATTCTGCGGTGGCTCCTTCCCTGATCTACCTGA TGATGACGCAGCAAACAGATACTCTGCAGTGACCTTCCCCCGTAAACTATGCCGTCTCGGTCTAACCTACATGGGAAAGAGAGAAATGCCCATAGTATTC CCATTTGCACCCATTCTCAAAAGGTTGGATCTTCTCTATGCATTGCTGGACACCGAGGACCATTGCCTTTTGATTGAAAGGTGCACCAATTTAGAAATTC TCGAGACGAGAAATGTGATCGGAGATAGAGGGTTGGAGGTTCTAGCTCGGTGTTGCAAGAAGTTAAAGAGGCTCCGAATCGAGCGGGGTGCCGATGATCA AGGACCGGAGGACGAAGGAGGCATAGTCACACAACGAGGAGTGATATCTCTAGCGCAAGGCTGCCTAGAACTCGAATACATGGCCATCTACGTCTCCGAC ATCTCCAACGCAGCTCTCGAGCACATAGGCACCTACTCAAAGAACCTGAACGATTTTAGGTTGGTCCTACTCGATCGAGAAGAAAGAATCGCCGACCTGC CGCTCGACAACGGAATCCGAGCACTATTAAGCGGTTGCGACAAGCTAAGAAGATTCGCTCTCTACGTCAGGCAAGGTGGTCTGACCGATTTGGGAATGAG TTATATCGGCCGGTACAGCCAGAACGTGAGGTGGATGCTCCTCGGTTATGTCGGAAACAGCGACGAGGGACTTCTCGCATTATCCAGAGGATGCCCCAGC CTGCAGAAGCTCGAAATGAGGGGGTGCTGCTTCAGCGAGAGCGCCCTCGCTAGAGCTGCTGTGCAACTGCATTCTCTGAGGTACTTGTGGGTCCAAGGCT ACCGAGCTTCGCAGAGTGGTAGGGACCTTCTAGCTAGGGCTCGGCCGTTCTGGAACATAGAGCTGATTCCGCCGAGGAAGGTGGTTGTGCCTACAGACGG AGGAGAGACGGAGTTGGAGCATCCGGCGCAGATACTAGCTTACTACTCTCTAGCTGGACCGAGAAGAGATTTTCCGGATACAGTTGTTCCCTTGGATCCA GTAAGCTTTTAA
AA sequence Show only first row Show all	>Lus10028265 pacid=23166468 polypeptide=Lus10028265 locus=Lus10028265.g ID=Lus10028265.BGIv1.0 annot-version=v1.0 MEENQNNGKVSRTDSFSGGGGGVVADDVVFGCVLPYIHDVRDREVVSLVCRSWYELEALTRKHVTIALCYTASPDRLRRRFSHLESLKLKGKPRAAMFNL IPDDWGGYVTPWVKEIADSFTCLKSVHFRRMIVWDSDLELLARSRGEALQHLKLDKCSGFSTDGLLHVTRCCRQLRTLFMEESIIVENDGDWLHEIAAHN SVLEALNFYMIDLAEVKVEDLELIAENCRSLTSVKINDCEILDLIGFFKSASSLEEFCGGSFPDLPDDDAANRYSAVTFPRKLCRLGLTYMGKREMPIVF PFAPILKRLDLLYALLDTEDHCLLIERCTNLEILETRNVIGDRGLEVLARCCKKLKRLRIERGADDQGPEDEGGIVTQRGVISLAQGCLELEYMAIYVSD ISNAALEHIGTYSKNLNDFRLVLLDREERIADLPLDNGIRALLSGCDKLRRFALYVRQGGLTDLGMSYIGRYSQNVRWMLLGYVGNSDEGLLALSRGCPS LQKLEMRGCCFSESALARAAVQLHSLRYLWVQGYRASQSGRDLLARARPFWNIELIPPRKVVVPTDGGETELEHPAQILAYYSLAGPRRDFPDTVVPLDP VSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	0	1
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	1.0	0.8339
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	7.5	0.7650
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	8.1	0.7803
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10013905 [exp]	9.5	0.7976
AT3G15358			unknown protein		Lus10011176 [exp]	11.0	0.8196
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	11.2	0.8287
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10021086 [exp]	14.3	0.8068
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	15.2	0.6840
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	15.3	0.7241
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10007728 [exp]	17.0	0.7407

Compare expression of checked genes

Lus10028265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.