Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39950 379 / 6e-123 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040223 [exp] 1076 / 0 AT2G39950 404 / 2e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192800 [exp] 649 / 0 AT2G39950 444 / 1e-147 unknown protein Potri.008G064500 [exp] 625 / 0 AT2G39950 344 / 3e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028266 pacid=23166484 polypeptide=Lus10028266 locus=Lus10028266.g ID=Lus10028266.BGIv1.0 annot-version=v1.0 ATGTCTAACTCGACGAGACGTGAATCCGATGACGACTTCTCCGGCCAGCTGAACGGAGACGATTTTGACGATGACTCGTCCTTTTCCAACGGACCCGAGA CCTCTACTGCTGGATCTGTTACGGTTGGGCTGACGGAACGATTGTCGGAGATTCTGGTTGACGAAGGGGACGGCGATTTGCTGCTTCAACGGACCGATCG CGAGGATAGGGTATTGCAGTGGTTACAAGCGCTCGATGTTCACGTCATGGGTGCTTGCCGAGCTGACGAGAGGCTGAGGCCTCTATTGAAATTGAATGCT TCTGACGGTGCTGCCGAAGATCGGCTCCTGTCGTATCTGAGCCAGCACTTTGATCCGTTGGAGGTAGGCATGCTTGCTAGGTGCTTCTGCATACCGCTTG TTTCTATCAGGGTTGGCAAGATCAACAAACAAGGGAATCTGTTTTGCCCCACGTCTGCAAGAGGGAATTTGAGTCTGTCAGTGTTGCCAACTTCTGATCT GCGTCTCACATTCATCGGGGATGATGGCTCAACAGAGAGATTATTTACCCTAAGTGGTAAAGCCCATGGCTCAGCTGTTGCGGTTGAAGAAATTCCAGCA GACAGTTCTGGCCGGTCTTTTCAAATAAAAGTTGACGGCGGTAGAGTTTTTAACTATTGGTGCTGCGAAAAGTTCAAGCTGTTGGGAATCGAATTAATCT CCAAGATGAAGGATATCTTGAAGAGGAAACCGTCGGTAGCGAAATTAACCGGAATTAGCAAATCTCGTCTTGATTGCTTTGCGAACCACATTCGATCATA TCTCGTGGGAATTAGCAACAAAGAAATTGCAGCTACTACCTCTTCTCCTTCGTTTTCCTCCAGCGCAGACGACTTGTCCGCTTCAACAAGTTCGTTGCAG CATTCCAGACACCGTGGGAGGCAGCCATTGAAGACCAATCCCCATTATCAAGTAAGCCTCAGTCCATGGTCAAGTTCCTTCAAGGAGGGTATCACGAGAA ACTTGTCTTCTTCGAGGAACGTTCCTCGCGAGAAGCTACGCGACCTAGACAGCCTGGTGGCGAACAGTTTGTCTGCACCAGACAGCCTGGTGGTTACTGT GCCATCTTCTGCTGATGACATCGGTAAATCAAACGAAGTTACAGGTTATCCGGTGGCACCGTTGAGTTTCCTTGGATCTCTTGCAAAATTAGATATTCCA GAAATTCAAAGCTCAACTTCCTCGCCATTAACACCACCAGTATTCTCTCCATATTACAGTTGGTGCCCTTTAGGTGGAACAAATTCTTCAAAGTTTCCAG AAGTCCCCGTTTCCTCAATACAGACACCTTCGCTTCCTCCATTTTCCACGTTGATGTCTCCCTCGTCCAGTGCTTTAGCACCACCGCCCCATCTCAGCTT ACCAGGACTTCCTTCACTCGATTTGCCAGCACTCTTTCCCGGGCCATTGGTTCGGCTTCCGATTCCTGGATCTCAACAGATTTCTACTTTCACCCCTTTG ATGTGTGACCCCATTGTTCACCTGCCAGTCATCGACATTTGCTCATCTGGTCCAGCCTACTTGGTGAGTGCTGGTCCAGCTATCCCAGGTACAATCCCGC CTTTTCACTCACAGCGCCCAATAACTTCCGAGACCGAATCAGCTCTGGAAGCTGGTGCCAGAGAGACTCTTCGTTTACTCATCAGCAGTTCGACAAACCC AAATCAGCAGCTGATTAATGTCTTCCCAGGTATCTATTCCTCTGCCGACGATGATGATAAGAAACAAGGAGTTCTTGCTGTTGGTAGCCGTGGACTCTAT TCAGGAACTAGGGGCATCGATTTGATTGCAAACGACATGGCCACCTTGGGATTGATCTCGATGTCGCAGAGCTCCATTGGATGTGGTGGTAGTTATGTAA GCGAACCATTTGCGAATCGTGAAGGATTGTCGGGCGAGGCCAATAGTATGGATGAGACACCGTCTTTCCACGAAGAGGCTCTTCCTTATCCTAACTTGGG GGATGATGCTTAG
AA sequence Show only first row Show all	>Lus10028266 pacid=23166484 polypeptide=Lus10028266 locus=Lus10028266.g ID=Lus10028266.BGIv1.0 annot-version=v1.0 MSNSTRRESDDDFSGQLNGDDFDDDSSFSNGPETSTAGSVTVGLTERLSEILVDEGDGDLLLQRTDREDRVLQWLQALDVHVMGACRADERLRPLLKLNA SDGAAEDRLLSYLSQHFDPLEVGMLARCFCIPLVSIRVGKINKQGNLFCPTSARGNLSLSVLPTSDLRLTFIGDDGSTERLFTLSGKAHGSAVAVEEIPA DSSGRSFQIKVDGGRVFNYWCCEKFKLLGIELISKMKDILKRKPSVAKLTGISKSRLDCFANHIRSYLVGISNKEIAATTSSPSFSSSADDLSASTSSLQ HSRHRGRQPLKTNPHYQVSLSPWSSSFKEGITRNLSSSRNVPREKLRDLDSLVANSLSAPDSLVVTVPSSADDIGKSNEVTGYPVAPLSFLGSLAKLDIP EIQSSTSSPLTPPVFSPYYSWCPLGGTNSSKFPEVPVSSIQTPSLPPFSTLMSPSSSALAPPPHLSLPGLPSLDLPALFPGPLVRLPIPGSQQISTFTPL MCDPIVHLPVIDICSSGPAYLVSAGPAIPGTIPPFHSQRPITSETESALEAGARETLRLLISSSTNPNQQLINVFPGIYSSADDDDKKQGVLAVGSRGLY SGTRGIDLIANDMATLGLISMSQSSIGCGGSYVSEPFANREGLSGEANSMDETPSFHEEALPYPNLGDDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39950			unknown protein		Lus10028266 [exp]	0	1
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	1.0	0.9413
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	2.8	0.9326
AT2G39950			unknown protein		Lus10040223 [exp]	2.8	0.9379
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	3.0	0.9373
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10009277 [exp]	3.0	0.9261
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	5.5	0.9314
AT1G68490			unknown protein		Lus10038934 [exp]	8.7	0.9153
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	10.6	0.9275
AT3G02555			unknown protein		Lus10027224 [exp]	10.8	0.8933
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	12.0	0.9216

Compare expression of checked genes

Lus10028266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.