Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 618 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G01210 542 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 281 / 8e-90 HXXXD-type acyl-transferase family protein (.1) AT5G07870 276 / 1e-87 HXXXD-type acyl-transferase family protein (.1) AT5G07850 265 / 2e-83 HXXXD-type acyl-transferase family protein (.1) AT5G07860 265 / 2e-83 HXXXD-type acyl-transferase family protein (.1) AT5G67150 218 / 1e-65 HXXXD-type acyl-transferase family protein (.1) AT3G50280 207 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT3G50270 201 / 4e-59 HXXXD-type acyl-transferase family protein (.1) AT5G23940 191 / 4e-55 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040222 [exp] 929 / 0 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 440 / 2e-152 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 288 / 2e-94 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 238 / 8e-73 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 229 / 2e-69 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 216 / 1e-64 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 214 / 8e-64 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 202 / 1e-59 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 195 / 1e-56 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192400 [exp] 657 / 0 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 641 / 0 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 552 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 535 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 304 / 8e-99 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 298 / 3e-96 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 290 / 2e-93 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 263 / 6e-83 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 263 / 7e-83 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 262 / 1e-82 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028267 pacid=23166394 polypeptide=Lus10028267 locus=Lus10028267.g ID=Lus10028267.BGIv1.0 annot-version=v1.0 ATGCCTGCCGCACCTTCAAACTCCTCAGCCGTCACTGTCCACTCGAAATGCACGGTGGTCCCTGACCAAAAATCCACCATGGCCGACCTCAAGCTCTCCG CCTCCGACCTCCCCATGCTCTCCTGCCACTACATCCAAAAGGGAGCTCTCTTCTCCAAACCTCAATTCCCTTTCTCATCTCTCTGCCTCCTCCTCAAATC CTCCCTCTCCCACGCTCTTTCCTTCTTCCCTCCGCTCGCCGGCCGCCTCTCCACCGTATCCACCACCGCCGAAGTCTACATCACCTGCAACGACGCCGGC GCCGACTTCCTCCACGCCTCCGCCCTCTCAATTTCAGTCCTCGACATCATCGGCTCGGTCAGGGGACCCGAATTCGTCAACGGATTCTTCGCCATGGACC GCACCGTCAGCTACCAGGGTCATCACCGCCCGATTTTATCCGTCCAGGTGACGGAACTGGCTGACGGCGTCTTCGTCGGATGCTCCGTTAATCACTCCGT TACTGACGGCACCTCCTTCTGGAACTTCTTCAACACCTTCGCTCAGGTTTCCCGAGGCGTGAAATGCATATCTCGCCTCCCTGATTTCACGCGTGATGGC TCTTGCCCGCTGATGTCATCAGCCGTTCTGAAACTTCCCCCAGGAGGGCCACGTGTCACTTTTGATGAAACGGCACCGTTGAATGAGAGGATTTTCCGTT TCAGCAGGGAAGCGGTTTTGAAGCTGAAAGCGACCGTCAATAACAACAACAATTCCAAATGGGCCGGGTTGGTTGACCCGGTTGAGCTGATGGGTAAGAA GAGCAACGATGCGTTTTATCACCAAAAGAAGATGGGTGGTCAGGGCCTAAACGACAGCGTATTGGCGGTGAAGGAGAAAGAGATCTCTTCGTTTCAGTCT CTATGTGCGCTGGTGTGGAGAGCGGTGACACGCGCTAGAAACCTGAACTCGTCCAAAACCACAACGTTTCGGATGGCGGTGAACTGCCGCCACCGAGTGG CGCCGAAGATGGATGCGCTGTACTTTGGTAACGCAATTCAGAGCATTCCGACGTACGCGTCGGCTGGGGATGTTACGTCTAGGGAGCTGAGGTGGCTGGC GGAGAGGCTGAACGAGAACGTGAGCGCGTATAACGACGCGACGGTGAGGCGCGTGGTGTCCGAGTGGGAGGCGAATCCGAGGTGTTTCCCACTGGGGAAC CTGGACGGCGCGTCGATGACAATGGGGAGCTCTCCGAGATTCCCGATGTACGACAATGATTTCGGGTGGGGGAGGCCGTTGGCGGTTAAGAGTGGGAAGG CGAACAAGTTCGACGGGAAGATGTCGGCTTTCCCCGGGAGAGAAGGCGGCGGGACGGTTGATCTGGAGGTGGTGTTGTCGCCGGAGACGATGGATGCGAT TGAAGCTGACCAGGAGTTCATGCAGTTTGTGTCGAGCTGA
AA sequence Show only first row Show all	>Lus10028267 pacid=23166394 polypeptide=Lus10028267 locus=Lus10028267.g ID=Lus10028267.BGIv1.0 annot-version=v1.0 MPAAPSNSSAVTVHSKCTVVPDQKSTMADLKLSASDLPMLSCHYIQKGALFSKPQFPFSSLCLLLKSSLSHALSFFPPLAGRLSTVSTTAEVYITCNDAG ADFLHASALSISVLDIIGSVRGPEFVNGFFAMDRTVSYQGHHRPILSVQVTELADGVFVGCSVNHSVTDGTSFWNFFNTFAQVSRGVKCISRLPDFTRDG SCPLMSSAVLKLPPGGPRVTFDETAPLNERIFRFSREAVLKLKATVNNNNNSKWAGLVDPVELMGKKSNDAFYHQKKMGGQGLNDSVLAVKEKEISSFQS LCALVWRAVTRARNLNSSKTTTFRMAVNCRHRVAPKMDALYFGNAIQSIPTYASAGDVTSRELRWLAERLNENVSAYNDATVRRVVSEWEANPRCFPLGN LDGASMTMGSSPRFPMYDNDFGWGRPLAVKSGKANKFDGKMSAFPGREGGGTVDLEVVLSPETMDAIEADQEFMQFVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	0	1
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	2.0	0.8048
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	4.2	0.8381
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	6.9	0.7771
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	8.0	0.8239
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	8.3	0.8071
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	8.8	0.7479
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	9.9	0.7871
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	11.0	0.8028
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	11.8	0.8036
AT1G27990			unknown protein		Lus10037043 [exp]	14.9	0.7068

Compare expression of checked genes

Lus10028267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.