Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55820 143 / 3e-43 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040220 [exp] 236 / 1e-80 AT3G55820 108 / 1e-30 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192300 [exp] 244 / 5e-83 AT3G55820 164 / 3e-51 Fasciclin-like arabinogalactan family protein (.1) Potri.008G065101 [exp] 164 / 6e-52 AT3G55820 98 / 4e-26 Fasciclin-like arabinogalactan family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10028268 pacid=23166504 polypeptide=Lus10028268 locus=Lus10028268.g ID=Lus10028268.BGIv1.0 annot-version=v1.0 ATGGGGCTTAGGATTTACACTCTGAAGAACTCGGTTGCATTCGTCGGTTTAGTAGTCTCCGTTTGCTGCACTTTCGTAGTCATCATCTCAGTTCTAAAGC TTCCAGACGCGCCCCTGGAAAACAGAGCGATCAAACATCCGTACAGGAACTTCAGGAACCGGAAGGCAGTCGGCGACGAGAAGAAGCTAGGAAAATTCGG AGAGATGATGGTCGAGATGCTGCCCGATGACCTTGCCTTCACGGTGTTCGTACCATCCGAGAGAGCATTCGAGCGTGACCTCAGACTCAACGATGATAGC TTCTTGCGGAATGATACGTATGCAGTGGTTTCTCGAGTTCTAGGGTTCTCGGCGGTTCCCCGGACTCTTTACTCGGCAGCAGTTGATAATTCTTCACCGG TTTCATACGATTCGCTGTCCGGATTGACTCTGTTCATCTCCAAGGATGTTGAAGGAATGCTTGTTGTGAATAGAGTTGCAGCTGAGAAGGTTGATATCAG GAGGAAGAAGAGAATCGTCGTTCATGTTATGGATGGGGTGATCATGGATGCTGAATTCGAGCAATCGGTTCAGCCTGATGATGAAGGATGA
AA sequence Show only first row Show all	>Lus10028268 pacid=23166504 polypeptide=Lus10028268 locus=Lus10028268.g ID=Lus10028268.BGIv1.0 annot-version=v1.0 MGLRIYTLKNSVAFVGLVVSVCCTFVVIISVLKLPDAPLENRAIKHPYRNFRNRKAVGDEKKLGKFGEMMVEMLPDDLAFTVFVPSERAFERDLRLNDDS FLRNDTYAVVSRVLGFSAVPRTLYSAAVDNSSPVSYDSLSGLTLFISKDVEGMLVVNRVAAEKVDIRRKKRIVVHVMDGVIMDAEFEQSVQPDDEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55820			Fasciclin-like arabinogalactan...		Lus10028268 [exp]	0	1
AT4G19140			unknown protein		Lus10023813 [exp]	17.0	0.8665
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	18.7	0.8573
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	22.0	0.8661
AT2G37480			unknown protein		Lus10003982 [exp]	34.2	0.8611
AT2G01100			unknown protein		Lus10025460 [exp]	36.1	0.8609
AT5G03460			unknown protein		Lus10023922 [exp]	44.3	0.8464
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10025889 [exp]	50.5	0.8350
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	61.6	0.7923
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	61.7	0.8327
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	62.4	0.8525

Compare expression of checked genes

Lus10028268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.