Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042550 [exp] 130 / 2e-35 AT5G53840 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011409 [exp] 59 / 6e-10 AT1G69630 74 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 56 / 2e-08 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10022888 [exp] 54 / 3e-08 ND 38 / 0.010 Lus10006970 [exp] 97 / 5e-08 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10029589 [exp] 50 / 8e-07 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10002819 [exp] 49 / 2e-06 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10038935 [exp] 49 / 2e-06 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10038468 [exp] 47 / 5e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028270 pacid=23166489 polypeptide=Lus10028270 locus=Lus10028270.g ID=Lus10028270.BGIv1.0 annot-version=v1.0 ATGTCATTCTGCATTGCATCCTCTCCTTCCTCGACACGAAATCGATGGTCGAGACTAGCTTTATCTCGAGGAGGTGGAGATGCCTGTGGAAAGATGTTTC TATCCTATTTCAGGAGGCAGGGTCCCCGCTGGGGTTTCGAGAAACATGTAAGCAAGCTTCTGTCTCTCAGGTCCAGCGATATACCTGTTACCGAAATCAA CTTCGACTACATCTCTCCAGAAGACCGGCATGAAATGGAAATTGATGAATTGTTTGATAGAGTCATGCAGTATGCCGGTAGTGGTGGTGGTGGTGGTCAT CTTTACCATCTGTCAGTCAGCACCGATGATGCTAATGATCCTATTGCTCATCGTCATCATGAATCTCTCACGACACTCGAGTTTGGGGGTTTTAGTTTCG GTTCCCCAACGACCGCGATCTTCAAGTTTGTGACGTCTTTGAAGCTGTCTCGCTGTGACATTTTGCAGCGCGATCCTTTTGGTGGTTTCCCTTGTTTGAA ATGCTTGAAGCTGCTTAACTTGAGAATAACAGTTGACATGGTAGTATTGGGACTCGAATTACTGGACCTGGAAATCCATGCCCTGTGTTGTATTAACACG GGGATCGAAGTTCTAGCTCCAAAGCTGAAATCTTTCTGTTTGGTAGACGATACGTTAAGCGAACTTCCACTAGTTGGAATGAGGTCGTTGATGGATCGAA AAGCTTCCCCTTTCGCTACCTTGAAGGTTCAGTATGATAGCGGATCGCCCGACATCCCGTATCAAGTAATTCGTTATTTTGATTCTCGATGGTTCTCCTC ATTCGGAAGAGAGATCGTTTATGCTTGA
AA sequence Show only first row Show all	>Lus10028270 pacid=23166489 polypeptide=Lus10028270 locus=Lus10028270.g ID=Lus10028270.BGIv1.0 annot-version=v1.0 MSFCIASSPSSTRNRWSRLALSRGGGDACGKMFLSYFRRQGPRWGFEKHVSKLLSLRSSDIPVTEINFDYISPEDRHEMEIDELFDRVMQYAGSGGGGGH LYHLSVSTDDANDPIAHRHHESLTTLEFGGFSFGSPTTAIFKFVTSLKLSRCDILQRDPFGGFPCLKCLKLLNLRITVDMVVLGLELLDLEIHALCCINT GIEVLAPKLKSFCLVDDTLSELPLVGMRSLMDRKASPFATLKVQYDSGSPDIPYQVIRYFDSRWFSSFGREIVYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028270 [exp]	0	1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	1.4	0.9071
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	2.4	0.8491
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	3.2	0.7979
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	3.7	0.8645
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	4.5	0.8156
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	7.1	0.7889
AT3G27390			unknown protein		Lus10014881 [exp]	8.0	0.8038
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	12.4	0.7928
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	13.6	0.8099
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	14.7	0.8122

Compare expression of checked genes

Lus10028270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.