Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39990 407 / 4e-144 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT3G11270 117 / 5e-31 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 110 / 3e-28 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT5G56280 74 / 6e-15 CSN6A COP9 signalosome subunit 6A (.1) AT4G26430 69 / 3e-13 CSN6B COP9 signalosome subunit 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040218 [exp] 545 / 0 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10035522 [exp] 113 / 4e-29 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027775 [exp] 112 / 5e-29 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10027082 [exp] 68 / 7e-13 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192000 [exp] 487 / 6e-176 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065500 [exp] 335 / 9e-117 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065300 [exp] 120 / 7e-32 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 119 / 2e-31 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 113 / 2e-29 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.011G169900 [exp] 70 / 1e-13 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10028272 pacid=23166437 polypeptide=Lus10028272 locus=Lus10028272.g ID=Lus10028272.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTAGTGAGCAGACAGTACTTCAATTCGCGTCGACGGCTTCGTCGAATACTCTGTCGGCGAAGGTGCATCCTCTGGTCATCTTCAACATCT GTGACTGCTACGTGAGACGGCCGGACCAATCTGAGCGCGTAATTGGCTCCTTGCTCGGCTCTTTTTTGCCCGATGGAACCGTTGACATCCGTAACTCTTT CGCCGTTCCTCACAATGAGTCTTCCGACCAGGTTGCATTGGATATTGCTTACCATAATACCATGTTGGCGTCCCACCAAAAAGTGAACCCCAAGGAAGTC ATTGTCGGCTGGTATTCAACTGGTTTAGGAGTCACCGGTGGCAGTGCTCTCATTCATGACTTCTATTCCGATGAAGTTCCCAACCCTGTTCATCTAACGG TTGACACTGGATTCAAAAATGGGGAACCTGCAATCAAAGCATATGTGTCGGTAAATTTGTCTCTTGGAAGCACTCAGCTAGCAGCACAATTTCAAGAAAT CCCACTTGATCTTCGCATGATCGAAGCAGAGAGGATTGGATTTGACATCTTGAAGACGACAATGGTTGACAAGTTGCCAACTGATTTGGAAGGAATGGAA GCCTCGATGCAGCGGCTACTTGCACTGATCGATGATATCTATAAATATGTTGATGATGTGGTGCAAGGTCACACTGCTCCGGATAATAACGTAGGGAGGA TGATATCAGAAATCGTTGCATCGCTTCCAAAACTTTCACCGGCTGTATTGGATAAGCTTGTCAATGACAATATGCAGGACCATTTGCTGTTGCTATATTT GTCAAGCATAACAAGGACTCAGCTCAGCTTAGCAGAAAAATTGAACACAGCCGCTCAGATCATCTAG
AA sequence Show only first row Show all	>Lus10028272 pacid=23166437 polypeptide=Lus10028272 locus=Lus10028272.g ID=Lus10028272.BGIv1.0 annot-version=v1.0 MAAASEQTVLQFASTASSNTLSAKVHPLVIFNICDCYVRRPDQSERVIGSLLGSFLPDGTVDIRNSFAVPHNESSDQVALDIAYHNTMLASHQKVNPKEV IVGWYSTGLGVTGGSALIHDFYSDEVPNPVHLTVDTGFKNGEPAIKAYVSVNLSLGSTQLAAQFQEIPLDLRMIEAERIGFDILKTTMVDKLPTDLEGME ASMQRLLALIDDIYKYVDDVVQGHTAPDNNVGRMISEIVASLPKLSPAVLDKLVNDNMQDHLLLLYLSSITRTQLSLAEKLNTAAQII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	0	1
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	1.0	0.8637
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	3.0	0.8492
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	4.5	0.8492
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	4.9	0.8027
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	7.2	0.8531
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	7.7	0.8320
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	8.1	0.8434
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	9.0	0.8320
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	11.7	0.8390
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	12.0	0.8171

Compare expression of checked genes

Lus10028272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.