Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 510 / 0 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 509 / 0 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 482 / 3e-174 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT3G61430 482 / 4e-174 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G23400 474 / 7e-171 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT4G35100 388 / 5e-137 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G37170 382 / 9e-135 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G16850 380 / 6e-134 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37180 380 / 7e-134 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G53420 379 / 2e-133 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032283 [exp] 506 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 506 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10035483 [exp] 503 / 0 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014840 [exp] 477 / 8e-172 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10019934 [exp] 393 / 9e-139 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 390 / 1e-137 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023184 [exp] 389 / 3e-137 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10039222 [exp] 388 / 5e-137 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 388 / 8e-137 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191900 [exp] 545 / 0 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 538 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 518 / 0 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 514 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 496 / 8e-180 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 397 / 2e-140 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 396 / 4e-140 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.006G128000 [exp] 396 / 5e-140 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 393 / 7e-139 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.004G176300 [exp] 388 / 4e-137 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10028273 pacid=23166405 polypeptide=Lus10028273 locus=Lus10028273.g ID=Lus10028273.BGIv1.0 annot-version=v1.0 ATGGAAGGAAAGGAGGAAGATGTCAGACTGGGAGCCAACAAGTTCAACGAGAGGCAGCCTATCGGAACCGCCGCCCAAACTCACGACGACAAGGACTACA GGGAGCCCCCACCTGCTCCCCTGTTCGAGCCCGGTGAGCTCACTTCCTGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCATCGCTACTTTCCTCTTCCT TTACATCAGCGTCCTCACTGTCATGGGCGTCGTCAAGAGCCCTACCAAGTGTGGAACCGTCGGTATCCAGGGGATCGCCTGGGCCTTCGGTGGAATGATC TTCGCCCTCGTCTACTGCACCGCCGGAATTTCAGGTGGCCACATAAACCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCTCTGACAAGAG CGGTGTTCTACATGGTGATGCAGTGCCTAGGAGCCATCTGTGGTGCTGGTGTAGTGAAGGGTTTCGAAGGGAAGCAGCAGTACATGCTATTGGGAGGCGG GGCTAACTCTGTTAACCCTGGATACACCAAGGGAGATGGGCTTGGTGCTGAGATTGTTGGAACTTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGAT GCCAAGCGTAGTGCCAGAGACTCCCACGTTCCTATTTTGGCTCCCCTTCCGATTGGGTTCGCGGTGTTCTTGGTTCATTTGGCCACAATCCCCATCACTG GAACGGGAATCAACCCAGCTAGGAGCCTCGGCGCTGCCATCATCTTCAACCAGGATAAGGGATGGGATGATCACTGGATCTTCTGGGTCGGCCCATTCAT CGGCGCAGCTCTAGCAGCTTTGTACCACACGGTGGTGATCAGAGCCATTCCATTCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10028273 pacid=23166405 polypeptide=Lus10028273 locus=Lus10028273.g ID=Lus10028273.BGIv1.0 annot-version=v1.0 MEGKEEDVRLGANKFNERQPIGTAAQTHDDKDYREPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSPTKCGTVGIQGIAWAFGGMI FALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGKQQYMLLGGGANSVNPGYTKGDGLGAEIVGTFVLVYTVFSATD AKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNQDKGWDDHWIFWVGPFIGAALAALYHTVVIRAIPFKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	0	1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10032739 [exp]	5.3	0.9427
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	6.0	0.9446
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	6.5	0.9386
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	6.6	0.9511
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	7.6	0.9509
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	10.7	0.9393
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	13.3	0.8933
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10021603 [exp]	15.8	0.9225
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	19.2	0.9360
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	20.1	0.9283

Compare expression of checked genes

Lus10028273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.