Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55830 463 / 4e-165 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G04500 106 / 4e-25 glycosyltransferase family protein 47 (.1) AT1G80290 90 / 2e-20 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040216 [exp] 668 / 0 AT3G55830 471 / 5e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10031680 [exp] 287 / 1e-95 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10027392 [exp] 211 / 3e-66 AT3G55830 201 / 2e-62 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10037920 [exp] 114 / 1e-27 AT5G04500 1032 / 0.0 glycosyltransferase family protein 47 (.1) Lus10038646 [exp] 113 / 2e-27 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1) Lus10020174 [exp] 100 / 8e-24 AT1G80290 391 / 1e-136 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065800 [exp] 543 / 0 AT3G55830 470 / 7e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G191700 [exp] 531 / 0 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G232700 [exp] 108 / 5e-26 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.008G028900 [exp] 105 / 6e-25 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1) Potri.006G278400 [exp] 89 / 5e-20 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF09258 [flax] [poplar] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Lus10028274 pacid=23166557 polypeptide=Lus10028274 locus=Lus10028274.g ID=Lus10028274.BGIv1.0 annot-version=v1.0 ATGAGAGGGAGCTTGCTGATGAACCGCCGCGGATTGCAGAGATTCCGGCAGCTTGCGTTTACATCCACCGGATCGGCGAAGATCAAGCTACTGCTCGGGT GTTGCATCTTTTTCACGCTGCTAGCTTTGCCAGGATGGGCGTCCAAGTTTATGGGATGGAGTAATCTCTCTGCTTCCGATGATTTGATCCAAGCGCCAGG GAAAGGCTATGCTATTGTTATGAACACGTGGAAAAGATACGATCTGTTGAAGCAATCCATCGGCCACTATGCATCATGCTCCGAGCTCGATTCGATACAT ATTGTGTGGAGTGAACCTGACCCTCCTTCTGATTCTCTTGTTACACATCTAAACCGCATCCTGCAGTCGAAGTCAAGAGGACGGAGGAAAGTCGAACTAA AATTTGACATCAACACGGAAGATAGTTTGAACAATAGATTCAAAGAGATTAAGGATTTGAAGACGGATGCTGTCTTCTCAATTGATGATGATATCATATT TCCCTGCTCGTCAGTGGAGTTTGCTTTCCACGTTTGGCAAAGTGCACCGGATACCATGGTGGGATTTGTGCCACGCGCCCATTGGGTCAAACCAGCGCAT CATAAGAGTAAGTACTATACGTATGGTGGATGGTGGTCTGTTTGGTGGACGGGCACTTACAGTATGATTCTTTCAAAGGCAGCTTTTTTCCATAAAAAGT ATCTTGGTCTCTACACAAATGAGATGCCAGCATCACTAAAGGAATACACAACCAAGATCAGGAATTGTGAAGATATTGCCATGTCCTTTCTCGTAGCTAA TGTAACCGGTGCACCACCTATATGGGTTAAGGGGAAAATATTTGAGATTGGTTCCACGGGGATCAGTAGCTTGGGCGGTCATAGCGAAAGAAGAAGTCAG TGTATCAACAGATTTGTAGCCGAGTTTGGACGAATGCCGTTGATATCGACAACAGTTAAGGCAGTCGATAGCCGCCAAAGCTGGTTTTGGTGA
AA sequence Show only first row Show all	>Lus10028274 pacid=23166557 polypeptide=Lus10028274 locus=Lus10028274.g ID=Lus10028274.BGIv1.0 annot-version=v1.0 MRGSLLMNRRGLQRFRQLAFTSTGSAKIKLLLGCCIFFTLLALPGWASKFMGWSNLSASDDLIQAPGKGYAIVMNTWKRYDLLKQSIGHYASCSELDSIH IVWSEPDPPSDSLVTHLNRILQSKSRGRRKVELKFDINTEDSLNNRFKEIKDLKTDAVFSIDDDIIFPCSSVEFAFHVWQSAPDTMVGFVPRAHWVKPAH HKSKYYTYGGWWSVWWTGTYSMILSKAAFFHKKYLGLYTNEMPASLKEYTTKIRNCEDIAMSFLVANVTGAPPIWVKGKIFEIGSTGISSLGGHSERRSQ CINRFVAEFGRMPLISTTVKAVDSRQSWFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	0	1
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	2.8	0.8634
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	3.7	0.8972
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	7.7	0.8411
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	8.4	0.8058
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	10.4	0.8359
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	12.7	0.8154
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	14.7	0.7994
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	15.9	0.8364
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	23.2	0.7981
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	24.2	0.8626

Compare expression of checked genes

Lus10028274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.