Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40000 508 / 4e-179 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) AT3G55840 471 / 2e-164 Hs1pro-1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040215 [exp] 852 / 0 AT2G40000 527 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191300 [exp] 665 / 0 AT2G40000 505 / 1e-177 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) Potri.008G066000 [exp] 655 / 0 AT2G40000 532 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0380 [flax] [poplar] IDO-like PF07014 [flax] [poplar] Hs1pro-1_C Hs1pro-1 protein C-terminus CL0380 [flax] [poplar] PF07231 [flax] [poplar] Hs1pro-1_N Hs1pro-1 N-terminus
Representative CDS sequence Show only first row Show all	>Lus10028275 pacid=23166410 polypeptide=Lus10028275 locus=Lus10028275.g ID=Lus10028275.BGIv1.0 annot-version=v1.0 ATGGTTGATCTACACTGGAAAGCTAAGATGGTCTCCTCCGATTTCCCAAACACCCTGCAAGTACAGATTCCTGCGCCGCCTCCTTCTTTCCGTGGCGTCA CCTCCATCTCCCCTGTCTCCGCCTCCGACGCCGCCTGCTCCGCCTACGAGCAGTATCTCCGCCTTCCGGAGCTCAGGAAGCTCTGGTCCGACCGGCACTT CCCGGAGTGGACAAGCGAACCGATTCTCAAACCGGCTCTCCAGGCTCTGGAGATCACTTTCCGGTTCGTTTCCACGGTTCTGTCCGACCCGAGACCGTAC GCCAACAAGAGGGAATGGAAGCGGCGGCTCGAGTCGCTTGCCACAGCTCAGATTCAGCTCATCGCCGTTTTGTGCGAGGATGACGCCGCCGCCGGGGCTC CTATAGTCGATCTCGGATCGACGATCGGAGTTCTGGAGAGGGAGAGCAGCTACGCGGAGGTGTGGAAGCTCGCCGGCGACGGCGTCGCCGTGAATCGAGC CAGCGAAGCGAGCCTGCTACCACCGTTGGCGGCATGGCAGACGTCGGAGGACGTGGCGCAGAAGATCATGTACTCGATCGAGTGCGAGATGAGGCGGTGT CCGTATACGCTAGGTCTGGGAGAACCGAACCTGGCGGGGAAGCCGAACCTGGACTACGACGCCGTTTGCCGGCCGAGCGAGGTCCATTCCTTGAAGAGGA ATCCGTACGACCACATAGAGAACCAGGAGAACCAGACTCTGTACACAGCGCACCAGATTCTCGAATCGTGGATCCAGGTAGCCAAACTGGTCATAATCCG GCTGACGGAGCGAATCGAGATCGGAGATTTCGAATCGGCAGCCAACGATTGCTACTTCCTGGAACGGATCTGGAAGCTTCTAGCCGAGATCGAGGATCTC CACTTACTAATGGATCCGGACGATTTCCTCAAGCTGAAGAACCAGCTATCAATCAAATCGGCGACGGAGAAGGAGCCGTTCTGCTTCCGATCGAGATCTC TCGTGGAGATCACCAGAAGTTGCAAGGAGCTGAAGCATAAGGTGCCGGAGATTCTAGGGGTGGAGGTGGATCCGAAGGGAGGGCCGAGGATTCAGGAGGC GGCGATGAAGCTTTACAGGGAGAAGGGAGATTGGGAGAAGATTCAGATGCTGCAAGGGTTGCAGGCGGTGGAGGCGGCGCTGAAGAGATTCTTCTACGCG TACAAGCAGGTGTTGGTGGCGGTGATGGGGAGCTTGGAAGCGAAGGGTAATAACTCGGCGGCGGTGGTGGCGGCGAGTTCAGAGTCGTCGTGCGACTCGT TGACTCGGTTGTTTCTGGAGCCGACGTATTTTCCGAGCTTGGATGCGGCCAAGACGTTCCTGGGACAGTTCCATGATCGGAAACGAAGGCAATAG
AA sequence Show only first row Show all	>Lus10028275 pacid=23166410 polypeptide=Lus10028275 locus=Lus10028275.g ID=Lus10028275.BGIv1.0 annot-version=v1.0 MVDLHWKAKMVSSDFPNTLQVQIPAPPPSFRGVTSISPVSASDAACSAYEQYLRLPELRKLWSDRHFPEWTSEPILKPALQALEITFRFVSTVLSDPRPY ANKREWKRRLESLATAQIQLIAVLCEDDAAAGAPIVDLGSTIGVLERESSYAEVWKLAGDGVAVNRASEASLLPPLAAWQTSEDVAQKIMYSIECEMRRC PYTLGLGEPNLAGKPNLDYDAVCRPSEVHSLKRNPYDHIENQENQTLYTAHQILESWIQVAKLVIIRLTERIEIGDFESAANDCYFLERIWKLLAEIEDL HLLMDPDDFLKLKNQLSIKSATEKEPFCFRSRSLVEITRSCKELKHKVPEILGVEVDPKGGPRIQEAAMKLYREKGDWEKIQMLQGLQAVEAALKRFFYA YKQVLVAVMGSLEAKGNNSAAVVAASSESSCDSLTRLFLEPTYFPSLDAAKTFLGQFHDRKRRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	0	1
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	1.0	0.9510
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	3.0	0.8969
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	3.2	0.9206
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10021780 [exp]	9.6	0.8872
AT5G03230			Protein of unknown function, D...		Lus10026507 [exp]	11.3	0.8447
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	13.4	0.8120
AT5G11070			unknown protein		Lus10001943 [exp]	13.7	0.8582
AT4G29780			unknown protein		Lus10011946 [exp]	16.6	0.8827
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	18.0	0.8645
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	18.4	0.8219

Compare expression of checked genes

Lus10028275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.