Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40010 488 / 3e-175 Ribosomal protein L10 family protein (.1) AT3G09200 478 / 2e-171 Ribosomal protein L10 family protein (.1.2) AT3G11250 473 / 2e-169 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040214 [exp] 579 / 0 AT2G40010 484 / 6e-174 Ribosomal protein L10 family protein (.1) Lus10009887 [exp] 489 / 5e-175 AT3G11250 491 / 7e-176 Ribosomal protein L10 family protein (.1) Lus10014841 [exp] 486 / 1e-174 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10009447 [exp] 432 / 6e-154 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2) Lus10001549 [exp] 288 / 3e-95 AT2G40010 298 / 6e-99 Ribosomal protein L10 family protein (.1) Lus10043280 [exp] 54 / 3e-08 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191200 [exp] 488 / 2e-175 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2) Potri.008G066300 [exp] 488 / 2e-175 AT2G40010 510 / 0.0 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10 PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10028276 pacid=23166521 polypeptide=Lus10028276 locus=Lus10028276.g ID=Lus10028276.BGIv1.0 annot-version=v1.0 ATGGTTGGGAAGCCTTCGAAGGCCGATAAGAAGCTGGCTTATGACTCCAAGATGTGCCAGCTGCTCAATGACTACAGTCAGATCCTGGTCGTCGCCGCCG ACAATGTTGGATCGAACCAGCTGCAGAACATCAGGAGTGGACTTAGAGGCGACTCCGTCGTCCTCATGGGGAAGAACACCATGATGAAGAGGACTATTAG GGTTCACTCTGATAAGACCGGCAACAAAGCTATCCTCAACCTCCTTCCTCTTCTTCAGGGGAACGTTGGTTTGATATTCACTAAAGGTGATCTGAAGGAA ATCAGGGAGGAAGTCGCCAAGTACAAGGTTGGAGCACCTGCCCGTGTTGGTCTGATTGCCCCCATTGATGTGGTTGTGCCTCCTGGAGGCACTGGTCTCG ACCCATCTCAGACATCTTTCTTCCAGGTGCTTAACATACCCACCAAGATTAACAAGGGTGCAGTCGAAATAGTCACCCCAGTGGAACTGATCAAGAAAGG AGACAAGGTCGGGTCTTCTGAGGCCGCCCTTCTCGCCAAGCTTAACATCAGGCCATTCTCCTATGGTCTGATCGTAATTTCTGCCTATGATGATGGCTCG GTCTTCAGCCCAGAGGTGCTCGATCTCACCGAGGACGACCTCATGGCAAAATTCGCATCTGGTGTCTCCATGGTCACTGCATTTTCACTGGCCATCTCGT ACCCAACTCTCGCTGCTGCATCTCACATGTTCTTAAGTGCTTACAAGAACGTCTTGTCTGTTGCTGTTGATACCGAGTACACCTTCCCTCAGGCTGAGCT AGTCAAGGAGTACTTGGAGGATCCAACCAAGTTTGCAGTCGCAGCAGCAGTTAACATAACTTATGCAGACCCAAGTGATGCCCCTGCAGCTGCCAAGGAA GAGAAGAAAGAGGAGCCTGAAGAGGAGTCTGATGAAGAACCAATGGGCGGTTTGTTTGATGATGAGGATTATTAG
AA sequence Show only first row Show all	>Lus10028276 pacid=23166521 polypeptide=Lus10028276 locus=Lus10028276.g ID=Lus10028276.BGIv1.0 annot-version=v1.0 MVGKPSKADKKLAYDSKMCQLLNDYSQILVVAADNVGSNQLQNIRSGLRGDSVVLMGKNTMMKRTIRVHSDKTGNKAILNLLPLLQGNVGLIFTKGDLKE IREEVAKYKVGAPARVGLIAPIDVVVPPGGTGLDPSQTSFFQVLNIPTKINKGAVEIVTPVELIKKGDKVGSSEAALLAKLNIRPFSYGLIVISAYDDGS VFSPEVLDLTEDDLMAKFASGVSMVTAFSLAISYPTLAAASHMFLSAYKNVLSVAVDTEYTFPQAELVKEYLEDPTKFAVAAAVNITYADPSDAPAAAKE EKKEEPEEESDEEPMGGLFDDEDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	0	1
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	1.0	0.9993
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	2.0	0.9964
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	2.4	0.9949
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	3.5	0.9939
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	3.9	0.9924
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	4.9	0.9884
AT3G52610			unknown protein		Lus10014215 [exp]	5.3	0.9844
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	6.6	0.9791
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	6.7	0.9814
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Lus10023581 [exp]	7.7	0.9520

Compare expression of checked genes

Lus10028276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.