Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05760 382 / 9e-133 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1) AT3G24350 269 / 2e-88 ATSYP32, SYP32 syntaxin of plants 32 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040213 [exp] 636 / 0 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1) Lus10033080 [exp] 286 / 6e-95 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2) Lus10017741 [exp] 273 / 3e-90 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191100 [exp] 480 / 2e-171 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1) Potri.006G157000 [exp] 255 / 5e-83 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2) Potri.018G072400 [exp] 249 / 2e-80 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10028277 pacid=23166414 polypeptide=Lus10028277 locus=Lus10028277.g ID=Lus10028277.BGIv1.0 annot-version=v1.0 ATGGCATCCACTTACAGAGATCGGACGGCGGAATTCCGATCACTCACCCAAACGCTTACCAAGATCGGAGGAGGAATCAAACCAGATCGACCTCAATCTC AGGAAACTGATCCTTTTCTTCGTTCAAACCAACACTCTTCGTCGCTGTCTTACAGATCCGAGTTCAACAAGAAGGCTTCTTTGATCGGGCTCGGAGTTCA TGAAGCCTCCCAAAAGGTCGCTAGGCTTTCCAAACTGGCAAAGAAGTCGTCGATGTTTGATGACCCTACAGTCGAGATCCAAGAACTGACTGTGCTTATA AAGAATGATATTACAGCTTTGAACTCAGCTCTTACAGATCTTCAGACCCTTCAGAGGATGGAAATAGCTGATGGGAACTACTCCGAGGACAGAGTGGTTC ATTCCACGGCAGTTTGTGATGACTTGAAGAACAAGCTCATGGGGACTACTAAAGAGCTTCAAGATGTGTTAACCACTAGAACAGAGAATATCAAAGCTCA TGAGAACAGGAAACAGATATTCTCTGCTAATGCTTCAAGAGAAAACCCTTTTGTTCGTCCTGCAAAACCCTTAGTCGAACCGCCTCCTTGGTCAAGTTCA ACAAACCAATTTGACCCTTCACAGCCATTAGCGTTGCCATCAAATGGCGTCCAAGTTGGCAGCCAATTGAGACGGAGGCCAGCAGTTGACAATGCTCCTT CACAACAGATGGAAATGGCCATGTTACAAGAAGTTGTCCCTAGACAGGATAGTTTGGCTCAAAGTCGCGCATCTGCTCTTCACAACGTGGAATCAACCAT ATCAGAACTTGGTGGGATCTTTACACATTTGGCCACCATGGTTGCCCAACAAGGAGAGCTGGCAATCAGAATTGATGACAACATGGACGAATCTTTGTCC AACGTCGAAGGTGCTCGCAGTGCCCTGCTGCAACATCTTAACTCAATATCATCAAATAGGTGGCTTCTTATCAAGATCTTCGCCATCATAATATTCTTCT TGATGGTCTTCATCTTCTTTGTGGCTTGA
AA sequence Show only first row Show all	>Lus10028277 pacid=23166414 polypeptide=Lus10028277 locus=Lus10028277.g ID=Lus10028277.BGIv1.0 annot-version=v1.0 MASTYRDRTAEFRSLTQTLTKIGGGIKPDRPQSQETDPFLRSNQHSSSLSYRSEFNKKASLIGLGVHEASQKVARLSKLAKKSSMFDDPTVEIQELTVLI KNDITALNSALTDLQTLQRMEIADGNYSEDRVVHSTAVCDDLKNKLMGTTKELQDVLTTRTENIKAHENRKQIFSANASRENPFVRPAKPLVEPPPWSSS TNQFDPSQPLALPSNGVQVGSQLRRRPAVDNAPSQQMEMAMLQEVVPRQDSLAQSRASALHNVESTISELGGIFTHLATMVAQQGELAIRIDDNMDESLS NVEGARSALLQHLNSISSNRWLLIKIFAIIIFFLMVFIFFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	0	1
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	1.7	0.8785
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	2.4	0.8445
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	3.2	0.8519
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	6.0	0.8286
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	6.9	0.7990
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	6.9	0.7873
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	7.9	0.8011
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	8.4	0.8316
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	9.4	0.8350
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	10.6	0.7935

Compare expression of checked genes

Lus10028277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.