Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11200 311 / 8e-108 Alfin AL2 alfin-like 2 (.1.2) AT5G05610 305 / 8e-106 Alfin AL1 alfin-like 1 (.1.2) AT3G42790 250 / 7e-84 Alfin AL3 alfin-like 3 (.1) AT5G20510 249 / 3e-83 Alfin AL5 alfin-like 5 (.1) AT1G14510 238 / 7e-79 Alfin AL7 alfin-like 7 (.1) AT2G02470 236 / 5e-78 Alfin AL6 alfin-like 6 (.1.2) AT5G26210 210 / 6e-68 Alfin AL4 alfin-like 4 (.1) AT5G35210 41 / 0.0006 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014843 [exp] 376 / 1e-133 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10040207 [exp] 368 / 9e-131 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2) Lus10009889 [exp] 367 / 4e-130 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10005035 [exp] 296 / 4e-102 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10027805 [exp] 292 / 9e-100 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10026268 [exp] 242 / 2e-80 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10026269 [exp] 242 / 2e-80 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10015637 [exp] 238 / 6e-79 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10042402 [exp] 215 / 6e-70 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069200 [exp] 330 / 2e-115 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.010G188100 [exp] 324 / 3e-113 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.016G116900 [exp] 310 / 8e-108 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.006G100900 [exp] 299 / 3e-103 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.018G050200 [exp] 254 / 3e-85 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 244 / 2e-81 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.003G044700 [exp] 242 / 1e-80 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.006G145300 [exp] 241 / 4e-80 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.004G230500 [exp] 239 / 2e-79 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.019G060900 [exp] 46 / 1e-05 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10028280 pacid=23166505 polypeptide=Lus10028280 locus=Lus10028280.g ID=Lus10028280.BGIv1.0 annot-version=v1.0 ATGACTTCCATCTCCACTAGCCCACGCACGGTTGAAGAGATCCTCAAGGACTACACCGCCCGCCGGTCCGCCCTCCTCCGCGCTCTCACTCTCGATGTCG ACGATTTCTACTCGCAATGCGATCCAGAAAAGGAGAATCTGTGCTTGTATGGACACCCAAACGAGTCATGGGAGGTGACACTTCCGGCAGAGGAGGTTCC ACCGGAGCTTCCCGAGCCAGCTTTGGGCATCAATTTCGCAAGAGACGGTATGCAGCGCAAAGATTGGCTCTCTCTGGTTGCAGTCCATAGTGACTGCTGG CTGCTCTCAGTGGCATTCTACTTCGGTGCCCGCCTTAACCGCGACGAAAGAAAGCGCCTTTTCAGTATGACGAATGAATTCCCCACCCTCTTTGAAGTTG TAACTGGTCGGAAACCATCGAGAGACAAACCGAGCACGGACAGCGGGACTTTGATTTTTTTGGCAATGCAGAGATCACAAGAGGGGCATGCGAAAACTAA CTCGAAGCCACTCGACGAGAGCTATGGGGACGAAGAAGAAGATGAGCATGGGGAGACGGTCTGTGGCAGCTGCGGAGGAACTTACAGTGCCGACGAGTTT TGGATTGGCTGCGATATCTGCGAGCGATGGTATCACGGGAAATGTGTGAAGATCACACCGGCAAAGGCGGATAACATCAAGCATTACAAGTGCCCGTCTT GCTGCACGAAAAAGGCTAGGCAGTAG
AA sequence Show only first row Show all	>Lus10028280 pacid=23166505 polypeptide=Lus10028280 locus=Lus10028280.g ID=Lus10028280.BGIv1.0 annot-version=v1.0 MTSISTSPRTVEEILKDYTARRSALLRALTLDVDDFYSQCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCW LLSVAFYFGARLNRDERKRLFSMTNEFPTLFEVVTGRKPSRDKPSTDSGTLIFLAMQRSQEGHAKTNSKPLDESYGDEEEDEHGETVCGSCGGTYSADEF WIGCDICERWYHGKCVKITPAKADNIKHYKCPSCCTKKARQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	1.4	0.9086
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	2.8	0.8206
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	3.7	0.8884
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	5.2	0.8191
AT4G32930			unknown protein		Lus10005503 [exp]	10.4	0.8686
AT5G64180			unknown protein		Lus10008120 [exp]	15.6	0.8166
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10010141 [exp]	17.4	0.8059
					Lus10014959 [exp]	18.8	0.7503
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	18.9	0.8116
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	19.2	0.7816

Compare expression of checked genes

Lus10028280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.