Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07200 399 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 394 / 5e-122 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 221 / 3e-60 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G30350 152 / 1e-37 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 139 / 2e-33 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50920 71 / 4e-12 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G52490 70 / 6e-12 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G25140 64 / 4e-10 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G51070 63 / 7e-10 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040206 [exp] 1632 / 0 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036183 [exp] 408 / 3e-128 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 389 / 8e-120 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 137 / 1e-32 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 127 / 8e-30 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 125 / 2e-29 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 117 / 2e-26 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040527 [exp] 74 / 3e-13 AT1G74310 906 / 0.0 heat shock protein 101 (.1) Lus10032544 [exp] 70 / 5e-12 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188200 [exp] 756 / 0 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G069100 [exp] 717 / 0 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G046700 [exp] 261 / 3e-73 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 244 / 2e-67 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 129 / 3e-30 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 125 / 4e-29 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 74 / 2e-13 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G105100 [exp] 70 / 6e-12 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 70 / 7e-12 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.006G262700 [exp] 69 / 8e-12 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Lus10028281 pacid=23166420 polypeptide=Lus10028281 locus=Lus10028281.g ID=Lus10028281.BGIv1.0 annot-version=v1.0 ATGTCCATCCTGGACGACCCGGTTGTCAGCCGGGTCTTCTCCGACGCCGGGTTCCGGAGCTCCGAAATTAAACTCGCGGTTTTCCGGCCCATCCCTCTCC ATCTTAGAACCCCGACTCTCGCCTACTCGGATCCGGGTCGGAAGAACGGATTCACTTTCCAGTTCCCGGGTAGTTTCCCCGGGTTCTTCAGCGGGAACGA GAACTTCCGAAGAATCGGAGAAGTACTGGGGAGAAGCCAGGCGAGGAATCCTCTGCTTCTCGGCGTATGCGCCTGCGATGAGCTCGCTAACTTCGTCGAA TCACTACAGAAAAGGAAGAACGACGGCAACATTCTACCGTTGGGATTGTCCGGGTTGAGCGTGATTCGATTGGAGAGCGAGATCTCCCAATTCCTCAGCC GGAAAAAGTCGGATAAAGGAAATCTCGATCCCCGATTGGAAGAAGTGGATCGATCTCTGGACCGGGATCCGGGACCCGGATCGGTTCTGAGCTTCGGGGA TTTGGATTCGTTTGTCAAGAACGAAGATGGAAGAGTGAGTTACGTAGTGGAGAGATTGACGAGATTGGTACAGCAGAGTAGAAATAGTAAGCTGTGGTTG ATCGGAGCGGCGGCGAGCTACGAGACGTATTCCAAGTTTGTAGGGAAGTATCCTTGTATTGTTAAGGACTGGGATCTGCAGCTTTTGCCCATCACTTCCG TTACTAGAGCTTCTTCTTCCTTTGCTGCTGAATCTTACCCTAAATCCAGCTTCTTCCTTGCTGCAAGTTGCAGTTTGATGGAGTCGTTTATTCCATTTGG TGGATTCTTTTCGACACCATCAGATTTCAAGGTTCCCTTAGGCAGCCCTTACCAGTACATGACAACACGTTGTCTCCCGTGCAATGAGCAAGAATCAGTC ACTCTATCGAGACGATCGTCAGTTCCTACGATTACAGATCAGTATCATCAACCTCTTGAGTTACCTTCTTGGTCGAAGATTAGAGATGATAAAGATGTGC TGAGTTGCAGAGCAGCCAGTTTGCAGATAGAACAGGATTTCATGTGTCAAGAGCAATCACCTTCTGTTGACATTCATCCTCCTAAGTTTCCTACCATCAT GGGCTTTCGGCTGGATGAAGACGGTAAAAGGGGCGTGGGGTCTGGAAATGATAGCACAACGTACTTAAAAGCTGCTTCATCTGTCACCATTGATTCAGCT GTTTCTTTGCCTGCAATTGGGAAACAAAGCGAAAAGCTTTCGAATGAAGATGCCGAATCTGGCGGTACTGCTCTGAAATCTCCTCGTAGTTTTTCTAATT CGAGCATGTGTTATGGTAGCCAAGCATCTCCTTCATCTGTGAACTCCATGACAATGGATCTCGGCCTTCGTATAAGCTCTGCTCCTCCCATCGGTCACCA AGATATCCGACAAGACCTGTCGCTATCCTTCTCTGGAATCACAGATGTCAATGGAGGGAGTATTTCTGATTCTTCACCAAAGCTGATTCCTCAGCGTGCT GCTAGTAACTTCAAGGATCTTCTCCGGTATCTATCTGAACGAGTCGGCTGGCAAAACGACGCCATACGTGTTATCAGTCAAACAATAGCCGATTGCAGGA CTCGAGATGGAAATCAACGAGGAAGGAACGTATGGTTTAGCTTCCTTGGACCTGACCGGGCCGGTAAGAGGAAAGTTGCTTCCGCGATTTCCGAGATAAT TTATGGAACCAAGGAAAACTTCGTCTGTGCAAACTTGGATCCTCAATTCGACCGACAAGGATTCAGTTCGATTGCGAGAGGGAAAACAGTAGTGGATTAT GTTGCTGGGGAGCTCTCCAGGAGGCCGGTTTCTGTTGTGTTACTCGAAAATATCGACAAAGCTGATGTGCAGGTGCAGAACAGCTTGTCCTGCGCCGTTC AGACCGGAAAGTTCTCCGATTCTCACGGACGAGAAGTTTCCATCAACAATGCAGTAATCATTACAACCTCAGCAGCTACTACTAGGCTTTCCCAGAAATT GTCTGCATATTCCGAGGATCAAGTTCTGAGAGCGAAAGGGTGGCCGATTCGAATATTAATCGAGAGACATTCCGAACTAGGCCAGGACCTTACTCTGTCA GTAAACAACAGCAAGAAATCCAACTCCATCTTCAAAAGGAAGCTTATAGGAATGAACGAAACTGTAGCAGTCCAGGATTTCCACGAATCGGAGCTAGCGA AACGAGCACACAAGGAACCGATCAGGAGCCTAGATTTGAACCTTCCGGCGCAAGAAAATGACTTGGCTGTCACGGAAGGTGAGAACTTGGCTTGGTTACA GGGCTTCTATGGCCGAGTCGACAGAGTGGTGGAGTTCAATCCTTTTGACTTCGACGCACTGGCTGACCGAATCTCCAACAAGATAAAGACGAGCTTTCAC AAATTCGTCGACATCGAGTGCTGTCTGGACATCGATCCAAAGGTTATGGAGCAGCTTCTTGCAACAACTTATGCATCTGATCATAACAAGACGGTGGAAG ATTGGATAGAACAAGTTCTGGGACGCGAATTTGCGCAAGTCAGGAGAAAGCATGGCGAACTGAATGCCGATTACACATTGAAACTCGTCTCATGTGATGC GGAAGAGGCCGATAATCCAAGAGGTTGCCTTCCGCCGAGAGTAGTCAGCAACTGA
AA sequence Show only first row Show all	>Lus10028281 pacid=23166420 polypeptide=Lus10028281 locus=Lus10028281.g ID=Lus10028281.BGIv1.0 annot-version=v1.0 MSILDDPVVSRVFSDAGFRSSEIKLAVFRPIPLHLRTPTLAYSDPGRKNGFTFQFPGSFPGFFSGNENFRRIGEVLGRSQARNPLLLGVCACDELANFVE SLQKRKNDGNILPLGLSGLSVIRLESEISQFLSRKKSDKGNLDPRLEEVDRSLDRDPGPGSVLSFGDLDSFVKNEDGRVSYVVERLTRLVQQSRNSKLWL IGAAASYETYSKFVGKYPCIVKDWDLQLLPITSVTRASSSFAAESYPKSSFFLAASCSLMESFIPFGGFFSTPSDFKVPLGSPYQYMTTRCLPCNEQESV TLSRRSSVPTITDQYHQPLELPSWSKIRDDKDVLSCRAASLQIEQDFMCQEQSPSVDIHPPKFPTIMGFRLDEDGKRGVGSGNDSTTYLKAASSVTIDSA VSLPAIGKQSEKLSNEDAESGGTALKSPRSFSNSSMCYGSQASPSSVNSMTMDLGLRISSAPPIGHQDIRQDLSLSFSGITDVNGGSISDSSPKLIPQRA ASNFKDLLRYLSERVGWQNDAIRVISQTIADCRTRDGNQRGRNVWFSFLGPDRAGKRKVASAISEIIYGTKENFVCANLDPQFDRQGFSSIARGKTVVDY VAGELSRRPVSVVLLENIDKADVQVQNSLSCAVQTGKFSDSHGREVSINNAVIITTSAATTRLSQKLSAYSEDQVLRAKGWPIRILIERHSELGQDLTLS VNNSKKSNSIFKRKLIGMNETVAVQDFHESELAKRAHKEPIRSLDLNLPAQENDLAVTEGENLAWLQGFYGRVDRVVEFNPFDFDALADRISNKIKTSFH KFVDIECCLDIDPKVMEQLLATTYASDHNKTVEDWIEQVLGREFAQVRRKHGELNADYTLKLVSCDAEEADNPRGCLPPRVVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	0	1
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	1.4	0.9332
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	1.4	0.9327
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	2.2	0.9121
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	3.0	0.9091
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	3.0	0.9166
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	3.9	0.8933
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	4.0	0.9093
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	4.9	0.9120
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	5.9	0.9108
AT5G67350			unknown protein		Lus10010401 [exp]	6.2	0.8942

Compare expression of checked genes

Lus10028281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.