Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40120 585 / 0 Protein kinase superfamily protein (.1) AT1G73450 533 / 2e-176 Protein kinase superfamily protein (.1) AT1G73460 532 / 6e-176 Protein kinase superfamily protein (.1) AT3G17750 520 / 1e-171 Protein kinase superfamily protein (.1) AT4G03175 207 / 1e-63 Protein kinase superfamily protein (.1) AT5G35980 210 / 2e-58 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G13350 177 / 5e-47 Protein kinase superfamily protein (.1.2) AT3G25840 176 / 9e-47 Protein kinase superfamily protein (.1.2) AT3G53640 167 / 7e-44 Protein kinase superfamily protein (.1) AT4G24740 159 / 2e-42 AME1, AFC2 FUS3-complementing gene 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040203 [exp] 924 / 0 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 531 / 6e-176 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 519 / 6e-171 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 507 / 3e-167 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 296 / 4e-97 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10009542 [exp] 212 / 4e-58 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 211 / 4e-58 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 161 / 4e-43 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10021688 [exp] 165 / 2e-42 AT3G25840 736 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069000 [exp] 778 / 0 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 768 / 0 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 532 / 4e-176 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 526 / 5e-174 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 213 / 7e-59 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 211 / 5e-58 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G119100 [exp] 182 / 5e-48 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G126900 [exp] 179 / 3e-47 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G244400 [exp] 169 / 3e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G049100 [exp] 160 / 5e-43 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028283 pacid=23166576 polypeptide=Lus10028283 locus=Lus10028283.g ID=Lus10028283.BGIv1.0 annot-version=v1.0 ATGGCAGCTGGGGGATGCGGCGGAGGAGTAGGTGGGGAGGAGGTGGGTGTTCTTCCCGACGTCGACCAAGTTCTCCAATTCCTGCGCAAGAACAGCCTGG GAGAGGTTGAATCGGCTCTTAAACGAGATATAATTGAGAAAAACGAATTGGGTTCTGCTGATTTCGAGAAATTTCTCTTCGAGCTACCTCCGGTGAGAGT TCCCGCCGGTCTCTGGCCATCGCCGTCGGCGGAAGGAGAATCTGGCCACGGCGGCGGCGGTGGTAAATCGGATTCTGGGTTTAGCTCCGATGACGAGTTT GTCAGCGTGGGTTCCACCACTAGCGGCGTCTGTTCTTCAGAATTCACTAATCCGTACGGACTCCGGTCTGGATCGCAGCCTAACTCGGACACCTCCTCGG AACGAATGTCGCAATTCGGAACTGCTCGCGACTACCCTGATTTCGATATGCAGAATGATCTGTTCCGGTACGATAACGAGAAAGATGAAGGCTTTTTCAT AGGTACAAGTGAGGATAAGTTTGTGATGAGCTCTGGTGAGGATAATACGGTTGGATTGTATGATAAATCTGAAGGATTTGATACTGAAGCAAGCGTTGAC TTCTTGGACAAGCCATGTCTTCTTGATGGAGCATTCGCGAACCGGGCTAAATCGCCTGATTCAAGAAGCCAACTTGAAAATTTCGTCTACTTGAGCTCCA AGGAAACTGCTATGGCTCTTGTACATACAACAGATACTTATGACTGCATAAAGGAAGAATCAAAAATTGAAGATTGTAAAAGTACTAACTCTCAACTAGT ACCATTCGGAGTGGATTATGATGAGCTAGAACAAGATGAACTGAGAGAAGCCCCCAACGAACTCCCAGCCGCTACAGAAGGGGAGGATACCGGTAATGAC GAGCTTCTCATGTATGAAAATCAGGAGGATGAGTACGAAGTCTTCGATCTACGAATCATCCACCGGAAGAACAGAACGGGATTCGAGGAGAACAAGGAGT TCCCTATCGTACTAAACGTGGTGATCGGAGGCAGATACTATGTAACCGAGTATCTAGGCTCGGCAGCTTTCAGCAAAGTAGTGCAAGCTCAAGATCTCTA CACGGGACTCGAAGTTTGCCTGAAGATCATTAAGAACGATAAGGACTTCTTCGATCAAAGCTTGGACGAGATTAAGCTTCTGAAGCTTGTGAACAAGCAC GATCCGAACGATGATAGGCACATTTTACGCCTTTATGACTACTTCTACCATCAGGAACACCTGTTCATCGTATGCGAACTCCTGCGAGCTAACTTGTACG AGTTTCAGAAGTTCAATCAAGAGTCAGGCGCCGAACCCTACTTCACATTAGGCAGACTTCAGATGATAACACGACAGTGTCTCGAGGCGTTGGAGTACTT GCACGGATTGGGAATCATTCATTGTGATCTGAAACCGGAGAATATTCTGATAAAGAGTTACCGAAGATGCGAAATCAAGGTTATTGATTTAGGAAGCAGC TGCTTCAAGACGGATAACTTGTGCTTGTACGTGCAGTCTCGTTCGTACCGTGCACCTGAAGTCATGCTAGGCCTTCCTTACGATGAAAGGATCGATATGT GGTCCCTTGGATGCATCTTGGCCGAGCTATGCTCAGGGGAGGTGCTGTTTCCGAACGATTCAGTGGCGATGATTCTGGGTCGGATGGTCGGAGTTCTTGG CGGTATAGACATCGAAATGCTGGAGAATGGGCAGGAGACTGACAAATACTTCACAAAGGAGCGCGACCTTTATTTCGTTAACGAGGAGACGGAGCAAGTA GAGTACATAATCCCGGAGGAAACCTCATTGGATGACAAAGTGGGAACCTCCGACGAGGCGTTCCTAGACTTCGCGAGGAGTTTGCTGGAGATCAATCCTT CTCGGCGGCTGACAGCGAGCCAGGCGCTTCGTCATCCTTGGCTATCGTATTCATACGACTGA
AA sequence Show only first row Show all	>Lus10028283 pacid=23166576 polypeptide=Lus10028283 locus=Lus10028283.g ID=Lus10028283.BGIv1.0 annot-version=v1.0 MAAGGCGGGVGGEEVGVLPDVDQVLQFLRKNSLGEVESALKRDIIEKNELGSADFEKFLFELPPVRVPAGLWPSPSAEGESGHGGGGGKSDSGFSSDDEF VSVGSTTSGVCSSEFTNPYGLRSGSQPNSDTSSERMSQFGTARDYPDFDMQNDLFRYDNEKDEGFFIGTSEDKFVMSSGEDNTVGLYDKSEGFDTEASVD FLDKPCLLDGAFANRAKSPDSRSQLENFVYLSSKETAMALVHTTDTYDCIKEESKIEDCKSTNSQLVPFGVDYDELEQDELREAPNELPAATEGEDTGND ELLMYENQEDEYEVFDLRIIHRKNRTGFEENKEFPIVLNVVIGGRYYVTEYLGSAAFSKVVQAQDLYTGLEVCLKIIKNDKDFFDQSLDEIKLLKLVNKH DPNDDRHILRLYDYFYHQEHLFIVCELLRANLYEFQKFNQESGAEPYFTLGRLQMITRQCLEALEYLHGLGIIHCDLKPENILIKSYRRCEIKVIDLGSS CFKTDNLCLYVQSRSYRAPEVMLGLPYDERIDMWSLGCILAELCSGEVLFPNDSVAMILGRMVGVLGGIDIEMLENGQETDKYFTKERDLYFVNEETEQV EYIIPEETSLDDKVGTSDEAFLDFARSLLEINPSRRLTASQALRHPWLSYSYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	0	1
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	1.0	0.9624
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	1.4	0.9497
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	5.7	0.9031
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	5.7	0.9208
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	5.9	0.9195
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	6.9	0.9108
AT5G50090			unknown protein		Lus10043461 [exp]	7.7	0.9059
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	7.9	0.8950
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	11.2	0.9082
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	12.8	0.9210

Compare expression of checked genes

Lus10028283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.