Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 322 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 81 / 1e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 79 / 3e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 81 / 5e-17 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G45700 75 / 2e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 74 / 4e-15 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT4G18140 73 / 3e-14 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G46410 72 / 7e-14 SSP4 SCP1-like small phosphatase 4 (.1.2) AT3G19595 43 / 0.0001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 41 / 0.0006 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014844 [exp] 369 / 6e-129 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 369 / 7e-129 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 279 / 2e-93 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004810 [exp] 252 / 2e-82 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040202 [exp] 87 / 1e-21 AT3G55960 77 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016610 [exp] 88 / 1e-19 AT1G55900 415 / 4e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004414 [exp] 88 / 1e-19 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10043165 [exp] 87 / 3e-19 AT1G55900 380 / 2e-131 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10032582 [exp] 86 / 6e-19 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188500 [exp] 354 / 3e-123 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 327 / 1e-112 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 285 / 2e-95 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 269 / 7e-90 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 86 / 2e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G093000 [exp] 85 / 2e-18 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.004G062900 [exp] 82 / 5e-18 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G364500 [exp] 82 / 1e-17 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G353700 [exp] 80 / 1e-16 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 75 / 6e-15 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10028284 pacid=23166463 polypeptide=Lus10028284 locus=Lus10028284.g ID=Lus10028284.BGIv1.0 annot-version=v1.0 ATGACTGAGTTGACTCAACCTCAGCCCGATGTGAACAACTCGCCTTGGTCTCACCAGCTATGGACGACGCTCAGGAACTGGCTGGCTTTCTTCTTCCAGA TCTTCCTTCAGATCATCCAACACCTCTCGCTACTCTCCTCTTCCTCTTCTTACTCCTTCAAGCCCTTGCCCGTCGTTGAATTATCGGAGACCAAATCCAC TCCTCCTCCGCCTACTTTGGAGATCGCGAGTGCCGGCCCTGTATCCAGTCAGCTCAATCAGCCCCTCCGTCGATTAACGGTTGTTCTAGACTTGGACGAG ACACTGGTTTGTTCCTACGAGACGTCCAGTTTGCCGCCGGATTTAAGGGATCAGACGACGGAATCCGGATTGAATTGGTTCCAGTTGGAGTGCTTCTCCT CTGAGAAGGACGGTGAAGGAAAACCTAAGATCAATTATGTGACGGTGTTTGAGCGTCCAGGGTTGCACGATTTCCTCAAACAGCTCAGTGAATTTGCTGA TCTTGTGCTCTTCACTGCTGGCTTGGAAGGTTATGCGAGGCCTCTTGTTGATAGGATTGATGCAGGAAACTTATTCAAACTTCGCCTTTACCGGCCTTCA ACCATTAGCACGCAGTACCGGGAACATGTGAAGGACCTCTCGTGCATGTCAAACGATCCCTGCAGAATTGTGATCGTTGATAACAACCCATTCAGTTTCT TGCTGCAGCCCCTGAATGGAATCCCATGTGTTCCATTTACAGCAGGCAGAGCAGAGGACACTCAGCTTCACGATGTAATCCTTCCACTCCTCAAGCAATT GTCTCAGCAGGTCGACGTAAGGACCGTACTTTACGAGAGGTTCCACATGCCTGAATGGTTCCAGAAGCACGGAATCCCTACTTCTAGGTCGAGATAA
AA sequence Show only first row Show all	>Lus10028284 pacid=23166463 polypeptide=Lus10028284 locus=Lus10028284.g ID=Lus10028284.BGIv1.0 annot-version=v1.0 MTELTQPQPDVNNSPWSHQLWTTLRNWLAFFFQIFLQIIQHLSLLSSSSSYSFKPLPVVELSETKSTPPPPTLEIASAGPVSSQLNQPLRRLTVVLDLDE TLVCSYETSSLPPDLRDQTTESGLNWFQLECFSSEKDGEGKPKINYVTVFERPGLHDFLKQLSEFADLVLFTAGLEGYARPLVDRIDAGNLFKLRLYRPS TISTQYREHVKDLSCMSNDPCRIVIVDNNPFSFLLQPLNGIPCVPFTAGRAEDTQLHDVILPLLKQLSQQVDVRTVLYERFHMPEWFQKHGIPTSRSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	0	1
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	3.0	0.9286
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	4.9	0.9305
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	5.2	0.9329
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	7.7	0.9207
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	8.8	0.9075
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	9.2	0.8984
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	12.0	0.8617
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	12.7	0.8594
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10014651 [exp]	12.8	0.8589
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	13.2	0.8989

Compare expression of checked genes

Lus10028284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.