Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 642 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 299 / 1e-89 CCR4 CRINKLY4 related 4 (.1) AT3G59420 204 / 9e-55 ACR4 crinkly4 (.1) AT5G54380 176 / 1e-45 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 171 / 6e-44 HERK1 hercules receptor kinase 1 (.1) AT5G28680 170 / 2e-43 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G59700 168 / 5e-43 Protein kinase superfamily protein (.1) AT1G30570 165 / 5e-42 HERK2 hercules receptor kinase 2 (.1) AT5G49770 165 / 6e-42 Leucine-rich repeat protein kinase family protein (.1) AT5G61350 164 / 7e-42 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040663 [exp] 495 / 1e-163 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 486 / 6e-160 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10040201 [exp] 342 / 4e-108 AT3G55950 359 / 8e-115 CRINKLY4 related 3 (.1) Lus10029170 [exp] 287 / 6e-85 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10012995 [exp] 262 / 2e-81 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10000764 [exp] 197 / 2e-52 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 197 / 3e-52 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10038595 [exp] 174 / 1e-47 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10034646 [exp] 171 / 2e-46 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068700 [exp] 721 / 0 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 718 / 0 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 572 / 0 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 281 / 9e-83 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 259 / 7e-75 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.017G029900 [exp] 199 / 7e-53 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 197 / 3e-52 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.001G405500 [exp] 177 / 5e-46 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 177 / 8e-46 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.013G159500 [exp] 177 / 1e-45 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028285 pacid=23166555 polypeptide=Lus10028285 locus=Lus10028285.g ID=Lus10028285.BGIv1.0 annot-version=v1.0 ATGCCTTGGGCGTCGGATCCACCCTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCC AGAGCCTCGTCTTTTACCAAGCGGGAGGAGGGACGGTGGCGCTTCGACCAAACACCTCCTACACGTCAATCGCCGGCGGCGACGAGTTCATCTGTGGAAT CCGCCCCGGCGGATACGATCTGCTCTGTTGGAATACATTCTCTCCGAACAACAATTCTGTTCCCTTCAACCCCAAGAGAGTCTACCACAACGTCTCTACT CGATTGCTGACCGTCTCCGTCGGAGACGATCAGATTTGCTCGACGACGAACGGTTCCCGGAGTGCGAAATGCTGGAGAGGCGACGAGGCGATCAGAACTC AGTTTCCCGGCGGCAGCGGCGGCGGTGGGGGGAACGGATTCGTTGCGATTTCATCGGGATTCGGATTTTCCTGCGGGATTTTGGTCAATGGGAGAGTGGT TCGGTGCTGGGGAACCAACCCGATTTCTCGGCGAATCGAATCGGAGTTTGGAAACATGACGATGCTGAGCGTTCAAGCTGGTGGGTCTCATGTCTGCGGA GTGAATTCGACTGGGATTCTTGTTTGCAAAGGGGATAATTCCGCCGGCCAATTGAACATTCCGTCGGATATTTCTTCTACGCCGTTGGAGTATTCACTGC TAGCTCTCGGAGCCAATCACAGCTGCGCTCTTCGCCAGATCGATAGTCCGGTGGTTTGTTGGGGAGGAGGTGTGAATGTCAGTGAGAATCTCCAAGGAAT GAAATTCGAGTCGATCGTTTCTGGTTCGAATTTTCTTTGCGGCATTTTGTCGAACAGCTTGTGGACAGTTTGCTGGGGACAAGGATGGTCATCGAATTCT TCAGAGTTTCAGATCGTTCCGCTGCCTAAGATCCTCCCAGGCCCTTGCGTCAATGTTTCATCCATCTGCAGTGGCGACGGCGAGTCTTACACCGACGGTG ACAGCTGGTGCGGCGGCGGTGTTGCTAGATTAGGATTAGGTGTTTGCAGGCCTAGTAAGCTCAACATTTCAACTCCATTGCCGCCGCCGACGCAATCGCC CCAATCGCCACCGTCCGAATCATCTCGCCCTCCATTATCATCTCGCCCTCCATCAAAAGCTCTGACAAGGGGGCTTTTGGCGTTCGCCATAATCGGATCA GTCGGAATCTTCTCCGGAATCTGCACAGTGATTTACTGCATCTGGAGCGGGGTATGCTGCCTCGGACGGGATAAGATCCACAACTCCGTCCAGCCAACAA TCACCAGAGCCGGATCCAACGGCAACGGTAACGGAGCGAATTCGAATTCAAACAACAACAGCGGATTCTTAGCGGCTTCCAGATCCTCCATCAGGCGGCA GAGCTCCAAAGCAATGAGGCGCCAGAGGAGCGGGACCTCGGCGGCAGACAGAGCCGCTGAGGAATTCACATTCTCGGAGCTGGCCTCTGCCACCAACGGA TTCTCCCCGGAGAACAAGATCGGTGGCGGAAGCTACGGCGTCGTTTACAAGGGAAAGCTCTCCGACGGCCGCGAAGTGGCGATCAAGAGAGGCGAAACTA GCAAGAAGGCGAAGAAATATCAGGAGAAAGAAAGCGCGTTCGAATCGGAGCTCAGTTTCCTCTCCAGACTCCACCATAAACATCTGGTGAGACTGGTAGG GTTTTGCGACGACGGAGAAGATGAAAAGCTTTTGGTTTATGAATATATGAAGAACGGCGCTCTGTACGATCATCTACACAATCCCGACGAGAAATCCGCC GCTGCTGCCGACGGCGGCGGCGGAGGGGTGATGAATTCGTGGAAAATGAGATTTAAAGTAGCTCTTGATGCTGCGAGGGGGATTGATTATCTACACAATT ACGCCGTTCCTCCAATTATCCACCGTGATATCAAATCGTCAAACATTCTGTTGGACGGGAATTGGGTAGCGAGGGTGTCGGATTTCGGGTTATCGTTATT GGGCCCTGACCCGGCGGACCGGGAGTTCCGGCCCACGAAGGCGGCTGGAACGGTGGGCTACATTGACCCGGAGTACTACAGCCTGAACGTTCTGACGGCG AAAAGCGACGTGTACGGACTGGGAGTGGTTTTACTGGAGCTGCTGACGGGGAAGAGGGCGATTTTTAAATCGGAGGACGGGACGCCGACGAGCATAGTGG AGTACGCGGCGGCTAAGATCGCCGGCGGGGAGCTGTGGGGGATACTGGACGGGAGAGTACGGCCCCCGGACGTGAACGAGTCGGAGGCGGTGGAGCTGGT GGGGTACACGGCGATGCACTGCGTGAGCGTGGAAGGGAAAGACCGGCCGACGATGGGGGATATAGTGGTGAACTTGGAAAGAGCTCTGGTGCTGTGTGAC GGCAGCCATGGCAGCATTTCAAGTGGGAGCATCTCCATTGTTTCCGAGTGA
AA sequence Show only first row Show all	>Lus10028285 pacid=23166555 polypeptide=Lus10028285 locus=Lus10028285.g ID=Lus10028285.BGIv1.0 annot-version=v1.0 MPWASDPPSXXXXXXXXXXXXXXXXXXXXXXXPQSLVFYQAGGGTVALRPNTSYTSIAGGDEFICGIRPGGYDLLCWNTFSPNNNSVPFNPKRVYHNVST RLLTVSVGDDQICSTTNGSRSAKCWRGDEAIRTQFPGGSGGGGGNGFVAISSGFGFSCGILVNGRVVRCWGTNPISRRIESEFGNMTMLSVQAGGSHVCG VNSTGILVCKGDNSAGQLNIPSDISSTPLEYSLLALGANHSCALRQIDSPVVCWGGGVNVSENLQGMKFESIVSGSNFLCGILSNSLWTVCWGQGWSSNS SEFQIVPLPKILPGPCVNVSSICSGDGESYTDGDSWCGGGVARLGLGVCRPSKLNISTPLPPPTQSPQSPPSESSRPPLSSRPPSKALTRGLLAFAIIGS VGIFSGICTVIYCIWSGVCCLGRDKIHNSVQPTITRAGSNGNGNGANSNSNNNSGFLAASRSSIRRQSSKAMRRQRSGTSAADRAAEEFTFSELASATNG FSPENKIGGGSYGVVYKGKLSDGREVAIKRGETSKKAKKYQEKESAFESELSFLSRLHHKHLVRLVGFCDDGEDEKLLVYEYMKNGALYDHLHNPDEKSA AAADGGGGGVMNSWKMRFKVALDAARGIDYLHNYAVPPIIHRDIKSSNILLDGNWVARVSDFGLSLLGPDPADREFRPTKAAGTVGYIDPEYYSLNVLTA KSDVYGLGVVLLELLTGKRAIFKSEDGTPTSIVEYAAAKIAGGELWGILDGRVRPPDVNESEAVELVGYTAMHCVSVEGKDRPTMGDIVVNLERALVLCD GSHGSISSGSISIVSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10028285 [exp]	0	1
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	2.2	0.8151
AT2G35200			unknown protein		Lus10036051 [exp]	5.1	0.7918
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	5.7	0.7731
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10002208 [exp]	5.9	0.7437
					Lus10026821 [exp]	9.1	0.6857
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	17.5	0.7654
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	19.3	0.7285
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	21.2	0.7187
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	21.9	0.7433
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	24.1	0.7081

Compare expression of checked genes

Lus10028285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.