Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05660 975 / 0 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) AT1G10170 159 / 1e-39 ATNFXL1 NF-X-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040200 [exp] 1334 / 0 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10034470 [exp] 179 / 7e-46 AT1G10170 1345 / 0.0 NF-X-like 1 (.1) Lus10025071 [exp] 115 / 6e-26 AT1G10170 1365 / 0.0 NF-X-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188700 [exp] 1017 / 0 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.012G043700 [exp] 171 / 2e-43 AT1G10170 1378 / 0.0 NF-X-like 1 (.1) Potri.008G068500 [exp] 156 / 1e-42 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.015G034500 [exp] 160 / 7e-40 AT1G10170 1363 / 0.0 NF-X-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028286 pacid=23166509 polypeptide=Lus10028286 locus=Lus10028286.g ID=Lus10028286.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCTGGCGGCAAGCAACAGTCGTTCACCGACTCCGATTCAGATTCCGATCACTCACACGGCGAATCAAAGTCCTCCCTCCGCCACACCGACC TCTCCAATTCCATCTTCAAATCCTACTTCGGGCACACATCCACCGCCACCACCTCGCCGTCGCCTCACGATCTCTCCAAAATCCAATCTTTCCTCAACTC TTCCTCCTCCGGCGCTCTCTCATGCCTCATCTGCCTGGAGCGCATCCGTCCTTCCGATCCGACCTGGTCCTGTCCTTCTCTCTGCTTCGACGTCTTTCAC CTCCTCTGCATCCAGTCCTGGGCTCGCCAGGCCTCCGATGTCGCCGCCACGCGCGCAGTCACGCGCCTCCCGATCACTTCCGACAAGGCATCCGAGACCG CTCTCTGGAATTGCCCCAAATGTAGGTCAGCTTACTCCAAGTCTCAAATCCCTAAATCTTATTGCTGTTTCTGTGGCAAGCTCGAGAATCCGCCGAATGA TAATCCATGGATACTCCCGCATTCCTGCGGCGAGGTTTGTGATCGTCCGTTGAAGAATAACTGTGGCCATTTCTGCTTGCTGTTGTGTCACCCGGGGCCT TGTCCTCCCTGTCCTAAGCTGGTTAAGGGCTCCTGTTATTGCGGCAAGATCGAAGACGTTCGGAGATGTGGATTCAAGGTGTTTTCGTGTAACAGTCGAT GCAATAAGCTTTTGGAATGTAAGAAGCACAAATGTAAAGAGATTTGTCACGATGGAGAGTGCCCACCTTGTCACGAGCGTGGGGTTTATAGTTGCTTGTG TGGGAAGAAACAAGAGGAGAGGGAATGCTGTGTGAGGGAATTCCAATGTGAGAATCCTTGCAAGAAAGAGTTGAGCTGTGGCAAGCATTTGTGCGAAAGA GGGTGTCACTCTCAAGAAGGGTGTGGGGAATGCCCGCTTCAAGGGAAGAGGACTTGCCCTTGTGGGAAGAGAGTGCATGAAGGAATGGCTTGTGACATTG CGGTGCCTTTGTGTGGTGATACTTGTGGTAAGAAGTTGAGCTGTCGATTCCATAGGTGTCATGAGAGATGTCACCGAGGGCAGTGTGTTGAGAATTGTAG AATGGTTGTCTCCAAGACATGTCGTTGTGGAAGCTTGAAGAAAGAGGTTCCTTGCTATCAAGATCTAGCATGTGAAAGAAAATGCCAGAGTATGAGAGAT TGTGGGCGCCATGCTTGTAGACGTCGATGCTGTGATGGGAACTGCCCACCTTGCGGAGAGGTTTGTGGAAAGAAGCTACGGTGCAGGAATCACAAATGCC CTTCCCCATGTCATCGAGGTCCCTGTGCCCCTTGCCCTGTGATGGTTCCAATCTCATGTTTTTGTGCTGAAACACACTTTGAGGTTCCGTGCGGAACTGA GATGGATCAAAAGCCTCCTAAATGCCGCAAATTATGTGAAATTCCTCCTTTGTGTAGGCATGCACCATACATCAAGCCACACAAATGTCATTATGGGACT TGCCCACCATGTCGGTTAGTTTGTGAAGGAGAGTACCGTTGTGGACATAAGTGCCAATTAAGATGCCATGACCCGAGACCCCCTCCCAGACCTGAATTCA CATTAAGACCGAAGAAAAAGAGACAAATTCATCAGCCTGAATGTACACCAGGGTCTCCCTGCCCTCCTTGTCCGGAACTTGTTTGGAGACCATGTGTTGG CCAACACTTCGCTGCAGAGAAAATGATGGTCTGTGCAAATAAACCTGAGTTTTCTTGTGAAAACCTGTGTGGGAATCCTCTTCCTTGTGGCAATCATTAT TGTACAAAGTCCTGCCATGCTGTTAAGTTCAATCCATCAAAATCACAGGGTCCAATTGGTACAAGTGAAACGTGTGAAAAGTGTAATCTTCGTTGCGAAA AGAAGAGGGAGCCCAGTTGTCCACATCCTTGTACTTTGAGGTGTCATCCAGACGATTGTCCACCCTGCAAGGCACTTGTGAAACGGTCTTGCCACTGTGG TTCGCTGGTTCATGCATTCGAGTGCATGTACTATAACAGCTTATCTAAAAAGGAGCAAATCTCTGTTCGTTCTTGTGGTGGATACTGCCATCGGAAATTG CCGAACTGCACTCATTTGTGTCCAGAGACATGTCATCCAGGTGATTGTCCATCACCTGACAAGTGCAGCAAAAAGGTGTTTGTTCGCTGTCGATGTCAAA CCTTGAAAAAGGAGTGGCTTTGTAAAGATGTTCAAGCAGCATATCACAAAGCTGGTTCTGATCCCAAAGATGTGTCCAGAAATCAGTTTGGACATGGTCT TCTACCTTGCAATTCAGATTGCAAGAGTAAAGTACAAGTTGCAGAGCAAGAGTTGCATTTGCGTACACCAAAGGACGTTGAGAAGGAAAAAGACGGTCCT ACTGACACACACCCTCCTAGACGTAGAAAACGACGTCAGCAAATGCAAGAAGAGAAGCAGTTATCATCACTTGAGAAAATCCTTCCCGCTTTGAAGAAGC TCATTCTAGTGGCCGTCCTCATCGTTACTCTAATAGCCGCATTATATTTTGGCTATAAGGGTCTAATGTGGCTCTCAGATTACATGAATGAAGTTGAAGA GCAAAGACATGGTAGCAAAAGATATCCCAGAGTCTAG
AA sequence Show only first row Show all	>Lus10028286 pacid=23166509 polypeptide=Lus10028286 locus=Lus10028286.g ID=Lus10028286.BGIv1.0 annot-version=v1.0 MSSAGGKQQSFTDSDSDSDHSHGESKSSLRHTDLSNSIFKSYFGHTSTATTSPSPHDLSKIQSFLNSSSSGALSCLICLERIRPSDPTWSCPSLCFDVFH LLCIQSWARQASDVAATRAVTRLPITSDKASETALWNCPKCRSAYSKSQIPKSYCCFCGKLENPPNDNPWILPHSCGEVCDRPLKNNCGHFCLLLCHPGP CPPCPKLVKGSCYCGKIEDVRRCGFKVFSCNSRCNKLLECKKHKCKEICHDGECPPCHERGVYSCLCGKKQEERECCVREFQCENPCKKELSCGKHLCER GCHSQEGCGECPLQGKRTCPCGKRVHEGMACDIAVPLCGDTCGKKLSCRFHRCHERCHRGQCVENCRMVVSKTCRCGSLKKEVPCYQDLACERKCQSMRD CGRHACRRRCCDGNCPPCGEVCGKKLRCRNHKCPSPCHRGPCAPCPVMVPISCFCAETHFEVPCGTEMDQKPPKCRKLCEIPPLCRHAPYIKPHKCHYGT CPPCRLVCEGEYRCGHKCQLRCHDPRPPPRPEFTLRPKKKRQIHQPECTPGSPCPPCPELVWRPCVGQHFAAEKMMVCANKPEFSCENLCGNPLPCGNHY CTKSCHAVKFNPSKSQGPIGTSETCEKCNLRCEKKREPSCPHPCTLRCHPDDCPPCKALVKRSCHCGSLVHAFECMYYNSLSKKEQISVRSCGGYCHRKL PNCTHLCPETCHPGDCPSPDKCSKKVFVRCRCQTLKKEWLCKDVQAAYHKAGSDPKDVSRNQFGHGLLPCNSDCKSKVQVAEQELHLRTPKDVEKEKDGP TDTHPPRRRKRRQQMQEEKQLSSLEKILPALKKLILVAVLIVTLIAALYFGYKGLMWLSDYMNEVEEQRHGSKRYPRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	0	1
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	3.7	0.9042
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	5.8	0.8637
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	6.2	0.8730
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	11.6	0.8829
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	12.2	0.9023
AT4G39420			unknown protein		Lus10030711 [exp]	13.0	0.8966
AT3G50370			unknown protein		Lus10019351 [exp]	13.3	0.9014
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	18.0	0.8897
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	18.3	0.8829
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	20.8	0.8505

Compare expression of checked genes

Lus10028286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.