Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40080 101 / 3e-29 ELF4 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) AT2G29950 79 / 5e-20 ELF4-L1 ELF4-like 1 (.1) AT2G06255 64 / 2e-14 ELF4-L3 ELF4-like 3 (.1) AT1G17455 64 / 4e-14 ELF4-L4 ELF4-like 4 (.1.2) AT1G72630 62 / 2e-13 ELF4-L2 ELF4-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018237 [exp] 94 / 1e-25 AT2G29950 112 / 6e-33 ELF4-like 1 (.1) Lus10040667 [exp] 91 / 1e-24 AT2G29950 108 / 4e-31 ELF4-like 1 (.1) Lus10000408 [exp] 69 / 4e-16 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10001250 [exp] 69 / 4e-16 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10000371 [exp] 69 / 4e-16 AT1G17455 140 / 2e-44 ELF4-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068200 [exp] 105 / 2e-30 AT2G40080 112 / 2e-33 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Potri.001G251600 [exp] 93 / 2e-25 AT2G29950 109 / 6e-32 ELF4-like 1 (.1) Potri.009G046400 [exp] 86 / 1e-22 AT2G29950 99 / 6e-28 ELF4-like 1 (.1) Potri.003G063900 [exp] 66 / 4e-15 AT1G17455 156 / 7e-51 ELF4-like 4 (.1.2) Potri.006G143800 [exp] 66 / 5e-15 AT1G17455 166 / 1e-54 ELF4-like 4 (.1.2) Potri.001G170100 [exp] 65 / 1e-14 AT1G17455 158 / 1e-51 ELF4-like 4 (.1.2) Potri.019G131700 [exp] 53 / 4e-10 AT2G06255 107 / 2e-31 ELF4-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07011 [flax] [poplar] Elf4 Early Flowering 4 domain
Representative CDS sequence Show only first row Show all	>Lus10028288 pacid=23166498 polypeptide=Lus10028288 locus=Lus10028288.g ID=Lus10028288.BGIv1.0 annot-version=v1.0 ATGGAGGATACTGGAAAGAGACGAGGAGGAGATCGCCGCCGCCGTGGGAAAGACGGCGACGGCGACGGAGGAGGAGGAGATGAGGAAGCGTGGGCGAATT TGGGCGGGACGTTCAGGGAGGTGCAGACGGTGCTGGACAGGAACAGGGAGCTGATCCAGCAGGTGAACGACAATCACCAGTCGAGAATCGGATCCAACAT GGCGAAGAACGTGCCGCTGATTCAGGAGATTAATCAGAACATCTCCAAGATCTCGACCATGTACTCCGACATGTCGTCCGGTTTCGTATCAACTTATCAT GACCGGAAAAAGGACGGCGGCAACGCCAAGGCGTGA
AA sequence Show only first row Show all	>Lus10028288 pacid=23166498 polypeptide=Lus10028288 locus=Lus10028288.g ID=Lus10028288.BGIv1.0 annot-version=v1.0 MEDTGKRRGGDRRRRGKDGDGDGGGGDEEAWANLGGTFREVQTVLDRNRELIQQVNDNHQSRIGSNMAKNVPLIQEINQNISKISTMYSDMSSGFVSTYH DRKKDGGNAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	1.7	0.8715
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	2.4	0.8496
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	3.2	0.8627
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	4.5	0.8469
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	5.5	0.8260
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	5.5	0.8420
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	7.3	0.7932
					Lus10029758 [exp]	7.7	0.8170
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	8.1	0.8235
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	8.1	0.8446

Compare expression of checked genes

Lus10028288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.