Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65165 435 / 1e-154 SDH2-3 succinate dehydrogenase 2-3 (.1) AT5G40650 324 / 2e-111 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 322 / 3e-110 SDH2-1 succinate dehydrogenase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040198 [exp] 590 / 0 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1) Lus10014573 [exp] 324 / 3e-111 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10032113 [exp] 324 / 5e-111 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10022319 [exp] 322 / 2e-110 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014879 [exp] 322 / 4e-110 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 319 / 4e-109 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028289 pacid=23166524 polypeptide=Lus10028289 locus=Lus10028289.g ID=Lus10028289.BGIv1.0 annot-version=v1.0 ATGATGAAGAGCGGCGGAAGCTGGCTGCGGCAAGGCTACAACAAACTCGCTAATACCATCGGCGGGAAAGAAAAGCCGCCGCAGGTAGCAGCAAAGCAAC ACAATTTCCCAATCCTGGAAGGCCACCCGATCGGCCAAGAACACGCTCAAGAATCCGTCCACACATTCGACGCCGTCAAAAATACAAAGCATCATCATCG GCCTCTCCGAAAGGAGTTCAAAATCTACAGATGGAACCCCGATGTTCCTACAGGGAAACCTTACCTCCAGTCTTTCCACGTAGACCTCAACGACTGCGGG CCCATGGTGCTCGACGCGCTGCAGAAGATAAAAGCAGAGGTGGAGCCCGGGTTGAGTTACAGGAGGTCGTGTAGGGAAGGGATATGCGGCTCGTGTGCGA TGAATATCGACGGAACAAACACGGTGGCTTGTTTGAAACCGATTGATCCGGACTTGTCGAAGCCGTTGTTCATCACTCCTCTGCCTCATATGTTTGTGAT CAAGGATCTTGTCGTCGATCTCACCAACTTCTACCAACAATACAAGTCGATCGAGCCATGGTTGAAGACGAAGCGGGGAGCGGAGGGAGGAAGAGAGTAC AGGCAGTCGCCGGAAGACAGGAAGAAGCTGGATGGGTTGTACGAGTGCATACTGTGCGCATGCTGCAGTACAGCGTGCCCATCTTACTGGTGGAACCCTG AAGTGTTTCTCGGACCTGCACCTTTGCTTCATGCTTACCGTTGGATCTGCGACAGCCGGGATGAGTATACAGAGGAGAGGTTGCAAGCGTTGACTGAGGA GACGAAGAAATTGTACAGGTGTCGGGTTATTAAGAACTGCACTGCTACGTGTCCCAAGAGTTTGAATCCTGCTGATGCCATTCATAAGATGAAGACCAAG CATTTGACATCTGTTCCTGTGGAGGAGTCAGAGAGCAAGAAGAACTATCAAGCCTGTTGA
AA sequence Show only first row Show all	>Lus10028289 pacid=23166524 polypeptide=Lus10028289 locus=Lus10028289.g ID=Lus10028289.BGIv1.0 annot-version=v1.0 MMKSGGSWLRQGYNKLANTIGGKEKPPQVAAKQHNFPILEGHPIGQEHAQESVHTFDAVKNTKHHHRPLRKEFKIYRWNPDVPTGKPYLQSFHVDLNDCG PMVLDALQKIKAEVEPGLSYRRSCREGICGSCAMNIDGTNTVACLKPIDPDLSKPLFITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTKRGAEGGREY RQSPEDRKKLDGLYECILCACCSTACPSYWWNPEVFLGPAPLLHAYRWICDSRDEYTEERLQALTEETKKLYRCRVIKNCTATCPKSLNPADAIHKMKTK HLTSVPVEESESKKNYQAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	1.7	0.9559
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	2.8	0.9532
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	3.5	0.9429
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	5.5	0.9285
					Lus10034979 [exp]	6.0	0.9293
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	7.7	0.8826
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	8.1	0.8908
					Lus10025385 [exp]	8.4	0.8149
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	8.8	0.9097
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	8.9	0.8823

Compare expression of checked genes

Lus10028289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.