Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 286 / 8e-97 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 180 / 5e-56 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 162 / 3e-49 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040197 [exp] 549 / 0 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 313 / 4e-108 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 234 / 4e-75 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 190 / 1e-58 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 176 / 2e-54 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000525 [exp] 156 / 1e-46 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 107 / 3e-28 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027793 [exp] 79 / 2e-18 AT3G11210 78 / 1e-18 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 71 / 2e-15 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G068000 [exp] 409 / 6e-146 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 406 / 9e-145 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 336 / 4e-117 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 319 / 2e-110 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 297 / 5e-102 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 297 / 5e-102 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 180 / 4e-56 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 165 / 5e-50 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 154 / 4e-46 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115900 [exp] 59 / 4e-11 AT3G11210 58 / 2e-11 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028290 pacid=23166516 polypeptide=Lus10028290 locus=Lus10028290.g ID=Lus10028290.BGIv1.0 annot-version=v1.0 ATGGTGGGGCCGTCCAGGCCACAGATCGTCCTTTTCGGATCCTCCATCGTGCAGCTCAGCTTCGGCAATGGCGGTTGGGGTTCCACTCTCTCCGAAATCT ATGCTCGCAGAGCAGATGTGATCTTACGAGGATACTACGGATGGAACTCTCGTCGTGCCCTCCAAGTGCTCGATAAAATTTTCCCCAAGGTATGCATCTA TGGAACTCTCGTTGTGCCGTCCAAGCGTTTTGTGCTTGGAGATGCTGCGGAACAGCCATCTTTGGTGATTGTGTATTTTGGTGGAAATGATTCAATGGGA GCACACTCTTCTGGATTAGGCCCTCATGTTCCACTTCCTGAGTATGTAGACAACATGAAGAAGATCGGCCTTCATCTCAAGAGCCTTTCGGAATCAACGC GAGTGATTTTCCTTAGTAGTCCTCCGGTTGATGAGGAACGAGTTCGGTCAAACACCAGTGAATACTTTAGCGAACTAGTTAGGACCAATGAGCTCTGCGG GGAGTACTCAGAAGCGTGTATAAAGCTGTGCAAGGAGCTGGACTTGAAAGTTGTCGACCTTTTCTCTGCAATCCAAACTCGAAGCGACTGGACTACTGCA TGCTTCACGGATGGGATTCACTTGGCAGCAGAAGGGAGCAAAATAGTGGTGAGGGAGATACTGAAGGTGCTGAGGGAAGCAGAATGGAGTCCGTCGTTGC ACTGGAAACAAATGCCGATTGAATTCCCAGAAGATTCGCCTTGTGATCTTGTTGCTGCCGACGGCAAAAGGACTCTGAATCCATCCACTTGGAATTTCCA CTGGGAGACTCAGTGGGATTAG
AA sequence Show only first row Show all	>Lus10028290 pacid=23166516 polypeptide=Lus10028290 locus=Lus10028290.g ID=Lus10028290.BGIv1.0 annot-version=v1.0 MVGPSRPQIVLFGSSIVQLSFGNGGWGSTLSEIYARRADVILRGYYGWNSRRALQVLDKIFPKVCIYGTLVVPSKRFVLGDAAEQPSLVIVYFGGNDSMG AHSSGLGPHVPLPEYVDNMKKIGLHLKSLSESTRVIFLSSPPVDEERVRSNTSEYFSELVRTNELCGEYSEACIKLCKELDLKVVDLFSAIQTRSDWTTA CFTDGIHLAAEGSKIVVREILKVLREAEWSPSLHWKQMPIEFPEDSPCDLVAADGKRTLNPSTWNFHWETQWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11210			SGNH hydrolase-type esterase s...		Lus10028290 [exp]	0	1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	4.5	0.8413
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	5.8	0.8356
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	6.5	0.8147
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	9.5	0.8124
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	12.6	0.8127
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	13.2	0.8150
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	14.5	0.8052
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	21.2	0.7958
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	22.6	0.8214
AT5G01790			unknown protein		Lus10030550 [exp]	27.9	0.7828

Compare expression of checked genes

Lus10028290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.