Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14378 43 / 1e-05 Protein of unknown function (DUF1278) (.1) AT5G52965 43 / 2e-05 Protein of unknown function (DUF1278) (.1) AT5G48210 41 / 4e-05 Protein of unknown function (DUF1278) (.1) AT2G21750 41 / 6e-05 Protein of unknown function (DUF1278) (.1) AT5G52975 40 / 0.0001 Protein of unknown function (DUF1278) (.1) AT4G35165 39 / 0.0003 Protein of unknown function (DUF1278) (.1) AT2G21740 39 / 0.0005 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019101 [exp] 172 / 6e-55 AT2G14378 50 / 3e-08 Protein of unknown function (DUF1278) (.1) Lus10034455 [exp] 170 / 1e-54 AT2G14378 49 / 5e-08 Protein of unknown function (DUF1278) (.1) Lus10019428 [exp] 140 / 6e-43 AT2G14378 50 / 1e-08 Protein of unknown function (DUF1278) (.1) Lus10043285 [exp] 138 / 4e-42 AT5G51105 47 / 1e-07 Protein of unknown function (DUF1278) (.1) Lus10019552 [exp] 77 / 3e-18 AT5G51105 37 / 7e-04 Protein of unknown function (DUF1278) (.1) Lus10032886 [exp] 76 / 9e-18 AT5G52975 52 / 1e-09 Protein of unknown function (DUF1278) (.1) Lus10027141 [exp] 75 / 3e-17 AT5G52975 46 / 5e-07 Protein of unknown function (DUF1278) (.1) Lus10001307 [exp] 73 / 1e-16 AT5G52975 44 / 2e-06 Protein of unknown function (DUF1278) (.1) Lus10019549 [exp] 69 / 4e-15 AT5G51105 49 / 4e-08 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10028291 pacid=23166424 polypeptide=Lus10028291 locus=Lus10028291.g ID=Lus10028291.BGIv1.0 annot-version=v1.0 ATGAATTTGGCAGTTCATTGCAGTCATTCAGATGTTCTCTTCGAAGTTGACCCGGCTCAGGTGGCGGTAGCGATGGCGAGCAACTCGCGGGACGCTGTGA AGTTCAGACAATCACAAGTGATCATCGATCCAATGGCGCCCATCTCAACTTACCACTTCTTCACTCTGACGCTCCTCATCTCCCTCGCCGCAATCCCAAC ACAGTCCGAACGCTTAAATCCTGAAGTCGCGGCAGGATGCTGGAAGGAAATATACCAAGTCCCGCAATGTGTGTTCCACATAATCAAGGCGTTCATTGCC AATGGGTCCATCGAAGACGTCGGCCTTCCTTGCTGCCGAGCTTTCGTTTCCTTGACCGGAGATTGTCAGGTCGAGATTTTCCAAAACAGTACGACTATTT CGACGATTCAAAGTTTTTGTACCGTCATCATCGCTTCTGTTGACTCGCCTCCTCTGCCTCCTACGCAATTGCATGATAATCCTGATGTTGAAGTTGGAAA CCATAAAAGAACTTGGCCAAAGCCCAAATGTTCGCCTTGTTTAATTGAATGA
AA sequence Show only first row Show all	>Lus10028291 pacid=23166424 polypeptide=Lus10028291 locus=Lus10028291.g ID=Lus10028291.BGIv1.0 annot-version=v1.0 MNLAVHCSHSDVLFEVDPAQVAVAMASNSRDAVKFRQSQVIIDPMAPISTYHFFTLTLLISLAAIPTQSERLNPEVAAGCWKEIYQVPQCVFHIIKAFIA NGSIEDVGLPCCRAFVSLTGDCQVEIFQNSTTISTIQSFCTVIIASVDSPPLPPTQLHDNPDVEVGNHKRTWPKPKCSPCLIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14378			Protein of unknown function (D...		Lus10028291 [exp]	0	1
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	7.7	1.0000
					Lus10001326 [exp]	8.1	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	12.2	1.0000
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10029225 [exp]	12.6	1.0000
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	14.7	1.0000
					Lus10014857 [exp]	15.6	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	16.2	1.0000
					Lus10026755 [exp]	21.5	1.0000
					Lus10027374 [exp]	21.7	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	23.4	1.0000

Compare expression of checked genes

Lus10028291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.