Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40090 748 / 0 ATATH9 ABC2 homolog 9 (.1) AT1G65950 200 / 3e-57 Protein kinase superfamily protein (.1) AT5G24810 117 / 3e-27 ABC1 family protein (.1.2) AT5G64940 115 / 5e-27 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT4G24810 110 / 5e-26 Protein kinase superfamily protein (.1.2.3) AT3G07700 105 / 8e-24 Protein kinase superfamily protein (.1.2.3) AT5G05200 104 / 1e-23 Protein kinase superfamily protein (.1) AT5G50330 96 / 8e-21 Protein kinase superfamily protein (.1.2) AT1G79600 92 / 3e-19 Protein kinase superfamily protein (.1) AT5G24970 82 / 3e-16 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040196 [exp] 829 / 0 AT2G40090 744 / 0.0 ABC2 homolog 9 (.1) Lus10026970 [exp] 121 / 1e-28 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 120 / 2e-28 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10020168 [exp] 118 / 2e-27 AT5G24810 1358 / 0.0 ABC1 family protein (.1.2) Lus10006363 [exp] 114 / 2e-26 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 114 / 2e-26 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10012317 [exp] 114 / 4e-26 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012865 [exp] 99 / 6e-22 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1) Lus10032628 [exp] 100 / 7e-22 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067900 [exp] 790 / 0 AT2G40090 823 / 0.0 ABC2 homolog 9 (.1) Potri.004G075100 [exp] 216 / 2e-62 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.018G003400 [exp] 126 / 2e-30 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 126 / 3e-30 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 123 / 2e-29 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.005G083200 [exp] 112 / 6e-26 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 111 / 1e-25 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 105 / 8e-24 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G091000 [exp] 104 / 1e-23 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G061300 [exp] 99 / 9e-22 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10028292 pacid=23166538 polypeptide=Lus10028292 locus=Lus10028292.g ID=Lus10028292.BGIv1.0 annot-version=v1.0 ATGGCGGCCCGATTTCTGTGGCGAACCCAGGCGAAGCTCGCGGTAGCATCTACCGCACTTGTCTCCGGCGGAGCCGCAGCGGCAATTGCTACTTCCGATG ATCCCGCCACCGCGCTCAAGGCTTGCACTACTGTTCCCCTTCGCCTTGTCCGTGACTCCGTAACTGCCGCCTCCATCGCTTTCGATTATGAGTACTCCTT GTTGGGATTGCCGGAAGGAAGTGATGAGAGGGTGAAAGTTAAGCATGAAGTTCACCTTAGGTCCGCCCGTAAGCTTCAGGAACTATTCTTCAGAAATGGA GGCATATATATCAAGCTTGGTCAACACATTGGACAGCTGGAATATTTGGTGCCACAAGAATATGTTCAGACAATGAGGGAGTCCATGTTGAACAGATGCC CTGTGGCTTCATATGACCAGGTGCGAGAGGTTTTCAAGAAAGAGCTTGGGCAGGAACCAGAGCAAATCTTTAGCGAGTTTGATCCTGTACCAATAGCTAG TGCTTCTCTTGCACAAGTTCATGTTGCTCGTACATCTGATGGCCAAAAAGTTGCTGTTAAGGTTCAACATACTCACATGACAGACACAGCTGCTGCAGAT CATGCTACGGTGGATATTATTGTAAATGCCCTACACTGGATGTTTCCTTCATTTGATTACAGATGGTTGCTTGATGAAATGCGTGAAAGTTTGCCCAAGG CAAGTACCCTTCTTTCTTCCTTATTCTTGGATTTTTGTCTGCTAGAACTGGATTTCTTAACTGAAGCAAAGAACAGCGAGAGATGTTTGGAGAACTTCTG GAAGTTATCTCCCCATATAGCAGGTTCTGTCTATGCACCAAGGGTCTACTGGAACCTAAGCACTTCAAAGTTATTAACAATGGAGTTCATTGATGGTGCA CATGTGAATGATATCAAGACGATTCGGAAACTTGGACTCCAGCCTAAGGAAGTTTCAACTTTAGTTAGTCAAGCATTTGCTGAGATGATGTTTAAACATG GTTTTGTGCATTGTGATCCCCATGCAGCCAACTTGATAGTTCGGCCCTTGCCTTCTAGTGGAAGGAACTTTCTGGGCAAGAGAAAACCACAGTTGGTACT CTTAGACCATGGCCTATACAAAGAACTTGATTTCTCTACGAGGTTCAATTATGCATCCCTGTGGAAGGCACTAGTATTTGCTGATGCGAAGTCAATAAAG GAAAATTGTGTTAAGCTTGGTGCCGGAGAAGATCTATATGCACTCTTTGCTGGTATCCTTACCATGAGGCCCTGGAATCGGGTCATCGACCCCGCCGTTG ATCATTTAGTGATAAGAGGCAATGCCGGTGAACGCTCAGAACTACAGATGTATGCCTCTCAGTATTTCCCTCAAATCTCAGAGCTTCTAAGGAGACTTCC GCGCGAAATTTTGCTGTTGTTGAAGACCAATGACTGCTTAAGAGCAGTGAATAATTCTCTGTTGCAAGGGTCTTCCCTTGAATCGTTCTTCATCGTTGGC AAAGTATCGTCCGAGGCAGTCATTGAGGCAAAGAAGTCGCAGAGGAAATCCATCCTAGCTTGGTTCGGCATTTGGTTCGATCAACTGCGCCTGGAAGTTC GACTTCTAGGGATGAAGGTGGCACTGTGGCTCTTCCAACTCCGCAGAGCTTTACCCGGGTGA
AA sequence Show only first row Show all	>Lus10028292 pacid=23166538 polypeptide=Lus10028292 locus=Lus10028292.g ID=Lus10028292.BGIv1.0 annot-version=v1.0 MAARFLWRTQAKLAVASTALVSGGAAAAIATSDDPATALKACTTVPLRLVRDSVTAASIAFDYEYSLLGLPEGSDERVKVKHEVHLRSARKLQELFFRNG GIYIKLGQHIGQLEYLVPQEYVQTMRESMLNRCPVASYDQVREVFKKELGQEPEQIFSEFDPVPIASASLAQVHVARTSDGQKVAVKVQHTHMTDTAAAD HATVDIIVNALHWMFPSFDYRWLLDEMRESLPKASTLLSSLFLDFCLLELDFLTEAKNSERCLENFWKLSPHIAGSVYAPRVYWNLSTSKLLTMEFIDGA HVNDIKTIRKLGLQPKEVSTLVSQAFAEMMFKHGFVHCDPHAANLIVRPLPSSGRNFLGKRKPQLVLLDHGLYKELDFSTRFNYASLWKALVFADAKSIK ENCVKLGAGEDLYALFAGILTMRPWNRVIDPAVDHLVIRGNAGERSELQMYASQYFPQISELLRRLPREILLLLKTNDCLRAVNNSLLQGSSLESFFIVG KVSSEAVIEAKKSQRKSILAWFGIWFDQLRLEVRLLGMKVALWLFQLRRALPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10028292 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	1.7	0.8646
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	8.9	0.8154
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	14.9	0.8371
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	18.7	0.7562
AT3G04490			unknown protein		Lus10042566 [exp]	19.4	0.8034
AT1G06510			unknown protein		Lus10001505 [exp]	21.6	0.8028
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	22.6	0.8198
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	31.0	0.7685
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	33.1	0.8194
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	35.2	0.8143

Compare expression of checked genes

Lus10028292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.