Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02030 46 / 4e-06 F-box family protein (.1) AT4G22430 45 / 9e-06 F-box family protein (.1) AT3G26010 41 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 142 / 2e-40 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10016522 [exp] 144 / 3e-40 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10002769 [exp] 132 / 2e-38 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10003349 [exp] 131 / 1e-35 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013987 [exp] 130 / 3e-35 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10040838 [exp] 129 / 4e-35 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10004928 [exp] 119 / 2e-34 ND 39 / 5e-04 Lus10013986 [exp] 119 / 2e-31 ND 55 / 7e-08 Lus10008162 [exp] 111 / 3e-31 AT1G60370 48 / 5e-07 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 64 / 3e-12 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 50 / 2e-07 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 43 / 5e-05 ND / Potri.007G027200 [exp] 41 / 0.0002 AT5G07610 84 / 1e-17 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028293 pacid=23166452 polypeptide=Lus10028293 locus=Lus10028293.g ID=Lus10028293.BGIv1.0 annot-version=v1.0 ATGGCGACCAACACCTCGAGTGCAAAGGAAACACCTCGGGGAAGTAGATATTGGAGGCGTCCCACACCAGTCGTCACTCTATCAATCTCCTCACTCAACA AACGACGATCACGAATCAGTTCGATCACCGAGCTCGGTCACGATATTCTGGTAGAGATTCTAATCCGAAGCTTCCCATATCCAAAATCCGCCTGCCACTC CAAAGCTGTCTCTAAGCAGTGGAGCTCCCTGATTTCCAGTCCCTGCTTCAATCGCCGTTTCGTCTCACACCACCAACAGAAGAGTATCAAGCTGCTTTAC CGGCAGAATGAGCTGGTATCGGTGATCTCGAGCTTTCTTCCTCCCAATCTTAATAGAGTAGAAGGAGAGACTCTTCACGTTTTCGATTGCTTCAAGGACT TGGTTTTATGCGGGTTTTGGGATGCAGATGACCGCAATCCGAAACCTATCAGATCGTACATGATCTGCAATCCGTTTACTCAGAAGTGGATGGCTCTTCC GTTGGCACCTCCGTATAGTTCTTCGCTGAATCCCCTACCAGTTGCAAGTTAG
AA sequence Show only first row Show all	>Lus10028293 pacid=23166452 polypeptide=Lus10028293 locus=Lus10028293.g ID=Lus10028293.BGIv1.0 annot-version=v1.0 MATNTSSAKETPRGSRYWRRPTPVVTLSISSLNKRRSRISSITELGHDILVEILIRSFPYPKSACHSKAVSKQWSSLISSPCFNRRFVSHHQQKSIKLLY RQNELVSVISSFLPPNLNRVEGETLHVFDCFKDLVLCGFWDADDRNPKPIRSYMICNPFTQKWMALPLAPPYSSSLNPLPVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22430			F-box family protein (.1)		Lus10028293 [exp]	0	1
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	6.5	0.6890
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	14.6	0.5981
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	15.2	0.6721
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	16.3	0.5981
					Lus10034545 [exp]	17.8	0.5981
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	19.3	0.5981
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	20.6	0.5981
					Lus10028981 [exp]	29.1	0.5496
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	44.1	0.5963
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	47.1	0.5738

Compare expression of checked genes

Lus10028293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.