Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40095 239 / 9e-81 Alpha/beta hydrolase related protein (.1) AT3G55880 235 / 9e-79 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT1G80280 120 / 1e-31 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 109 / 1e-27 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 95 / 2e-22 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040195 [exp] 310 / 4e-108 AT2G40095 231 / 8e-77 Alpha/beta hydrolase related protein (.1) Lus10014849 [exp] 271 / 6e-93 AT2G40095 212 / 8e-70 Alpha/beta hydrolase related protein (.1) Lus10030405 [exp] 268 / 4e-92 AT2G40095 220 / 3e-73 Alpha/beta hydrolase related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067700 [exp] 278 / 6e-96 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.010G189600 [exp] 265 / 5e-91 AT2G40095 207 / 6e-68 Alpha/beta hydrolase related protein (.1) Potri.003G059400 [exp] 130 / 7e-35 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 125 / 4e-33 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028294 pacid=23166529 polypeptide=Lus10028294 locus=Lus10028294.g ID=Lus10028294.BGIv1.0 annot-version=v1.0 ATGGGGTTCACCAAGGAAGAGAAAGCCAAGAGAGTTCTCAGAGGAGTCAAGACAGTTTTCTTCATCATCACCATGATCTTCTCCTTCCTCATCTTCTCAG CTCCGGTCCTCTTCGTCATCGCCGACGCTCTGCTCCCGGTATCCCTCCTCTCCGCTTCCTTATCACCTTCTTCTTTATCTGCTCATACTCTGTTCGCCGA CCTCGGCAACTTCGATTTTCGTTACTCCCTCGTCGACATCCCCCTCATTTCCATCCTCAGATCCGCTGTCATCTTCTGTGTCTACAGCTTCTGCGACGGG CCGAGGCTGTCCCGAGGGCCGTACTTAGGGATTACGGCGATCTGCTCCGTCTCGTCGCTGATTTACGTTTCTGCAAAGGCGCCGTACGTTTTCAGCGTGT ACAGGATCGATCGGGGAGGATACGTCCGCGGGATGGAGATTGCTCTGTTTATCTGCTCGTTGTTGCTGGCGATCGGTCATGTAGTTGTGGCGTATCGGAC GAGCTGTAGAGAGCGGAGGAAGCTTCTGGTTTACAAAATTGACATTGAAGCTATCTCAGCTTGCCAGAAAGGATTCCCTAGGTACCAAAAGATACTCCAG CAAGAACGAGTCAAAGTGAATAGCGACAAATATTAG
AA sequence Show only first row Show all	>Lus10028294 pacid=23166529 polypeptide=Lus10028294 locus=Lus10028294.g ID=Lus10028294.BGIv1.0 annot-version=v1.0 MGFTKEEKAKRVLRGVKTVFFIITMIFSFLIFSAPVLFVIADALLPVSLLSASLSPSSLSAHTLFADLGNFDFRYSLVDIPLISILRSAVIFCVYSFCDG PRLSRGPYLGITAICSVSSLIYVSAKAPYVFSVYRIDRGGYVRGMEIALFICSLLLAIGHVVVAYRTSCRERRKLLVYKIDIEAISACQKGFPRYQKILQ QERVKVNSDKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40095			Alpha/beta hydrolase related p...		Lus10028294 [exp]	0	1
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	3.2	0.7112
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	16.7	0.6713
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	20.3	0.6557
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	22.8	0.6883
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	23.8	0.7026
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	47.7	0.6350
AT2G30120			unknown protein		Lus10042267 [exp]	48.7	0.6245
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	49.7	0.6191
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	51.5	0.6086
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	52.6	0.6025

Compare expression of checked genes

Lus10028294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.