Plant FIBer expression Database

Lus10028295 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013987
[exp]
70 / 6e-14 AT3G23950 59 / 1e-08 F-box family protein (.1)
Lus10013986
[exp]
68 / 4e-13 ND 55 / 7e-08
Lus10007303
[exp]
67 / 4e-13 AT3G23950 45 / 6e-05 F-box family protein (.1)
Lus10003349
[exp]
67 / 7e-13 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2)
Lus10040838
[exp]
67 / 1e-12 AT3G23950 57 / 2e-08 F-box family protein (.1)
Lus10007302
[exp]
66 / 1e-12 AT1G15680 49 / 4e-06 F-box family protein (.1)
Lus10013907
[exp]
62 / 3e-11 ND /
Lus10004929
[exp]
57 / 1e-09 ND /
Lus10008157
[exp]
52 / 8e-08 ND 38 / 0.006
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10028295 pacid=23166462 polypeptide=Lus10028295 locus=Lus10028295.g ID=Lus10028295.BGIv1.0 annot-version=v1.0
ATGGCGAACGGTACCTCGACTGCAGAGGAAATTCCTTGGGGAAGTAGACATTGGAGGCGTCCCACACCCATCGTCACTCGATCAATCTCCTCACGCAACA
ACGCCATGGCGGGGACAGAAAACAACCGCCCGACGCTCTTACACTATGCAAGTATACCGGCGATTACAGTTTCGCAAGATGCTTTGCACCTGATCCCATG
CTACTACCCCAACGATTATGATGGTGATCATCATCTAGTCATTTGGAGATTGGTTGCACAAGACGGTAAATATTCATGGAGGAAACAACGTGAAGTGTTG
CCGAACAAGAACAAGTGTCGGTGTGGTATAACAGGTGAACGTACCGTTTCGGTAGAACCTCTTCTTCGTCCGTATAATTCGGAGATTGTCTTCTTCAAGT
GTTTAGCCTGTCAGCGTAATCTATATTCCTTGGATTTGTCAAGGGAAGGAGGAGAAGTGAAGTTATTGGGTGAAATACAAAAGGTGGATCCTCCATACGA
TTTTTATTATAAGGTGTTTGAGCCTAGATTTTCTTGTTGGCCTACATCAATTCCGACATACAAGGAGTTGCCTGGGCATATACGATGGGCTGGTGCTATG
AAGCAACACCTCAATAATTGA
AA sequence
>Lus10028295 pacid=23166462 polypeptide=Lus10028295 locus=Lus10028295.g ID=Lus10028295.BGIv1.0 annot-version=v1.0
MANGTSTAEEIPWGSRHWRRPTPIVTRSISSRNNAMAGTENNRPTLLHYASIPAITVSQDALHLIPCYYPNDYDGDHHLVIWRLVAQDGKYSWRKQREVL
PNKNKCRCGITGERTVSVEPLLRPYNSEIVFFKCLACQRNLYSLDLSREGGEVKLLGEIQKVDPPYDFYYKVFEPRFSCWPTSIPTYKELPGHIRWAGAM
KQHLNN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10028295
[exp]
0 1
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Lus10038344
[exp]
1.0 0.9928
AT1G50660 unknown protein Lus10002072
[exp]
1.4 0.9793
Lus10001343
[exp]
3.9 0.9460
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10032048
[exp]
4.0 0.8942
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Lus10023601
[exp]
4.9 0.9230
AT1G01420 UGT72B3 UDP-glucosyl transferase 72B3 ... Lus10005334
[exp]
6.7 0.8864
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10038655
[exp]
6.9 0.9039
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10022705
[exp]
7.9 0.8997
AT4G15050 Protein of Unknown Function (D... Lus10002231
[exp]
11.4 0.7918
AT2G47770 ATTSPO TSPO(outer membrane tryptophan... Lus10000500
[exp]
11.4 0.6670

Lus10028295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.