Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05680 971 / 0 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040194 [exp] 1536 / 0 AT5G05680 1010 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189700 [exp] 1108 / 0 AT5G05680 1021 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1) Potri.008G067600 [exp] 1102 / 0 AT5G05680 997 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10168 [flax] [poplar] Nup88 Nuclear pore component
Representative CDS sequence Show only first row Show all	>Lus10028296 pacid=23166571 polypeptide=Lus10028296 locus=Lus10028296.g ID=Lus10028296.BGIv1.0 annot-version=v1.0 ATGAGGTTCAAATTAGACATCGACGACGACGCCGGCTCGCCGGATTCTTCTTCTCGGCGGATACCGACAACAAAGGAGGAAGTGAAGTGGCTTCCGCTCC AGAAGCATCCGGTTTTCACTTACTCGAGCTCCGCCTCGTCCGGCGGAGCTCCGGCGGATGTTCTAGCTCCACGGAACCTTCTTGCGTGGGACGGTGCCTC CAGGCTGTATTACTGGGATTCACGCGAGAAGTGCCTCCACCGAGTTTCTATAAAACTAGGCGAACCGGAACCTGAGTCTGTGCTCGCCGCTACTCCGTCT AAGGTGTTGCTAGTGGATGTGCAGATTGACTTCGTGGTTAACAAAATCTCCATTAACAGGAACGGATCAGCTATGCTTCTTGCTGGTTTGGATGGTATAT GCTTGATGTATCTTTATGGGCGCAGTTCTGCTAGTGATAATGCCATTATCTGCAGGACTTTTCCAGTCGGTTCCCAACTGTATTCTGATGAAAGCAACAC AATCCGAACTCTACAGGTTTCTTGGCACCCTTACAGTGAGGCACATATAGGAGTTCTTTCATCTGATTCAGTTTTCAGAATCTTCAATTTGTCTTCGGAT TTCTTGCAACCAGAGCAGGAGTATTATCTACAGCCTGTTCAACCTGGTGGATCAAGAAATGCCGCTTGCATGTCTGCTGTTGATTTTTCTTTTGGCGGAG ACCACCTCTGGGACAGGTTTTCTGTATTTGTATTGTTCAGTGATGGTTCTATTTACCTTCTCTGCCCTGTTGTTCCCTTCGGGAGTGTCTACAAATGGGA CTCAGTTTTGGAGATATATAATGATGCCAACACACTGGGGTTGGAGTCATCTAATCCAATTGCTGTTAGCAATTCTAGTCGAGCAATCTCTTGGTTAGAA GCTACATTTCTTGAGTTAACTTCTGAAGAAGCAGACAAAGAAAACTTAGCTGCTGTCAAAGCTCATGCCCATGTTTTGTTCGATGCATCAGTCTGCTTGC AGGGACCTCTTCAGAGAATTCAGAGAAATAAGGACGATGAAGACTTTGCAGTGTCCAGTAGAGCGAGTCAAGGACGTGCGGTTGGTTTCCTCTACAATCT AGTCAGCAAAGACTCCGTTCTTGTTACCGCCTGGAGCAGTGGCCAGTTACAAATAGATGCATTGGCTGATGAAATCCAGCCAGTCTGGACTGCTGGTAGT GCACCTCGGCTCCGTGTCAGTTCGCATGACCAAGTTCTTGGTCTTGCCATGATATGTGAATCGATCCCACATGAGCTCCCTGTTATGACGCTTGATCAAC CACTTGATCATACTGTTTGGCTGGGCCACCCACCGCCTTTGTTAAGACTTGCAATTGTGGATTTGTCCTTGCCACAAGAAAGAGAAAGCGGCTGCCATAT TGTTATGTTTGCGGATCCCCTCATGCCTGAAAAAATTTATTGTCTTCATGAAGGTGGGGTGGACTCGATATTGTTACATTTTCTCCCATTTACTAATCAA TCAAGTGGAAAGGATGAAACTGTCAGGGCTCCATCTGTGCGTCCTGTCCTGAGTACATGCCAGGCAAAGAGTGCAACTGTATCTCCACTTTGTGGTTTCG TTGCACTCTCTGATTCATTTGGATACTCATGGATTGTGGGAATCACGGCTGCTCAAGAATGTGTTGTGCTAGAGATGAAAACATGGAATTTTATACTTCC TCTACAAATTGATAAGGACAATGCAAACAGTGAGGAGTTGAAGGAGGTGAATGCGCCGGACATCATAAGCAAAGAATTACTTGCTGGTCCCAAGGTGGTT CCTGTCCCTCAAGTGTCGCCAAACTTTCGTTCAGTTTCTGCCGACTCTATAGAAGGCCGGTCAATGCTTCATCAGTACTTCAAGCTTTTCCATGAAAATT ATGTTGAATATGCCCATAAGGTTTACTTTGAGCTGAAGCATCATGGACCACAGTTGAAGAGGATCATTACCAACCAACAGGCTCGTCTCAAGGAGGCTCA TGAGAAACTTGTGAAAGTCAAGGACAAACAGACAGGTTTAGAGGATAGGATCGAGCATGCAGTTCATCAGCACAATCTTCTGGAACAGCGTTTGCAACAC TTGAGGAATCTGCCTGGAGTTCACAAGAAACCTTTATCTAGAGCAGAGCGGAAGTTCAAGTCCGAACTAGACCAACTTACCGGAGTTGAGTTAGACGCAT TACATATGTCTATCGAGACTCTGAGAGCTAGGCAGAGAAGGTATGCGGCACGGGCTTCAAGAGACAGCATCTCTAATCAGCAAAGGAAGATAGCAGGGAG GAACCATGTTCTGGATTCCCAAATCTCCCAATTAAAGTCTTCGCTCGCTAAACTTTCACTTGTCAATGCTGAGAACTCGAAGAAAGTTAAGATTGTTGAA TCTGGCTTGAAAGCTCAGGAACGTGGAGTTCTACGGAGCTAG
AA sequence Show only first row Show all	>Lus10028296 pacid=23166571 polypeptide=Lus10028296 locus=Lus10028296.g ID=Lus10028296.BGIv1.0 annot-version=v1.0 MRFKLDIDDDAGSPDSSSRRIPTTKEEVKWLPLQKHPVFTYSSSASSGGAPADVLAPRNLLAWDGASRLYYWDSREKCLHRVSIKLGEPEPESVLAATPS KVLLVDVQIDFVVNKISINRNGSAMLLAGLDGICLMYLYGRSSASDNAIICRTFPVGSQLYSDESNTIRTLQVSWHPYSEAHIGVLSSDSVFRIFNLSSD FLQPEQEYYLQPVQPGGSRNAACMSAVDFSFGGDHLWDRFSVFVLFSDGSIYLLCPVVPFGSVYKWDSVLEIYNDANTLGLESSNPIAVSNSSRAISWLE ATFLELTSEEADKENLAAVKAHAHVLFDASVCLQGPLQRIQRNKDDEDFAVSSRASQGRAVGFLYNLVSKDSVLVTAWSSGQLQIDALADEIQPVWTAGS APRLRVSSHDQVLGLAMICESIPHELPVMTLDQPLDHTVWLGHPPPLLRLAIVDLSLPQERESGCHIVMFADPLMPEKIYCLHEGGVDSILLHFLPFTNQ SSGKDETVRAPSVRPVLSTCQAKSATVSPLCGFVALSDSFGYSWIVGITAAQECVVLEMKTWNFILPLQIDKDNANSEELKEVNAPDIISKELLAGPKVV PVPQVSPNFRSVSADSIEGRSMLHQYFKLFHENYVEYAHKVYFELKHHGPQLKRIITNQQARLKEAHEKLVKVKDKQTGLEDRIEHAVHQHNLLEQRLQH LRNLPGVHKKPLSRAERKFKSELDQLTGVELDALHMSIETLRARQRRYAARASRDSISNQQRKIAGRNHVLDSQISQLKSSLAKLSLVNAENSKKVKIVE SGLKAQERGVLRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	0	1
AT1G73930			unknown protein		Lus10032474 [exp]	3.5	0.9055
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	3.6	0.9099
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10009913 [exp]	4.0	0.8934
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	4.9	0.9071
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	9.5	0.9022
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	10.8	0.9052
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	11.5	0.8987
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	13.0	0.8870
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	14.8	0.8786
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	15.7	0.9045

Compare expression of checked genes

Lus10028296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.