Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05690 447 / 5e-159 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 255 / 2e-81 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G50660 246 / 1e-77 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G13730 229 / 2e-71 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G19230 202 / 1e-61 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 202 / 2e-61 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G30180 201 / 3e-61 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 197 / 2e-60 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 197 / 6e-59 Cytochrome P450 superfamily protein (.1) AT1G12740 195 / 1e-58 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040193 [exp] 588 / 0 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10030404 [exp] 459 / 2e-163 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 452 / 1e-158 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 244 / 4e-77 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 239 / 3e-75 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 231 / 6e-72 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 210 / 2e-64 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10031295 [exp] 206 / 2e-62 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 205 / 4e-62 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189800 [exp] 478 / 2e-169 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 470 / 4e-166 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 262 / 2e-84 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 261 / 7e-84 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G026500 [exp] 256 / 4e-82 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 249 / 2e-79 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G018400 [exp] 249 / 5e-79 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 219 / 9e-68 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.017G154600 [exp] 208 / 1e-63 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 206 / 5e-63 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028297 pacid=23166432 polypeptide=Lus10028297 locus=Lus10028297.g ID=Lus10028297.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCCAAGAAGATAACGTTTGAGTTAGCGATGAAACAGCTGATGAGCTTGGATCCATGCGAATGGACAGAAAAGCTAAGGAGGGAATACGTGC TTGTCATCGAGGGATTTTTCACCCTCCCTTTCCCTCTCTTCTCCACCACTTACCGCCGAGCCATCCAAGCGAGGACGAAGGTAGCGGAGGCGTTGACCTT GGTGGTGAGGGAGAGGAGGAAAGAGATGGAATTAGATGTGGAGAAGAAAAGAAATGACATTTTGGCTGCCCTTTTGGCCGCCGACGAGGGGTTGTCGGAC GATGAGGTTGTGGATTTCTTGGTGGCTATGCTGGTGGCAGGGTATGAAACGACGTCGACTAGCATGACCCTCGCCATTAAGTTCCTTACCGACACTCCTA TGGCTTTGGCTCAGCTCCGGGAGGAGCATGACGAAATCAGGAAGAGGAAGAGGGAAGGAGAAGCCCTGGACTGGATTGATTACAAAGCGATGCCGTTTAC TCAATGTGTCGTCAACGAGACCTTGAGAGTGGGCAACATAATTAGCGGGGTGTTTAGGCGAGCAATTACCGACATCCCTGTCAAAGGGTACACAATTCCG AAAGGGTGGAAGGTGTTTGTCTCCTTCCGAGCTGTGCATATGGACCAGGATCACTTCAAAGATGCCCGAACTTTTAACCCCTGGAGATGGCAGAACAATT CAGGGGCAATAACAAGTGTTGGGAATGTGTTCACCCCATTCGGAGGAGGGGGTCGGCTCTGCCCGGGTTACGAACTAGCCAGAGTCGAACTCTCCGTGTT CCTTCACCATTTAGTAACTGGTTTCAGTTGGGAGCCCGCTGAGAAAGATAAGCTAGTGTTCTTTCCGACCACGCGGACCCAGAAGCGATACCCTATCAAT GTCAGGCGTCGAGGTCAGATCCGAGCAGAGTAG
AA sequence Show only first row Show all	>Lus10028297 pacid=23166432 polypeptide=Lus10028297 locus=Lus10028297.g ID=Lus10028297.BGIv1.0 annot-version=v1.0 MEEAKKITFELAMKQLMSLDPCEWTEKLRREYVLVIEGFFTLPFPLFSTTYRRAIQARTKVAEALTLVVRERRKEMELDVEKKRNDILAALLAADEGLSD DEVVDFLVAMLVAGYETTSTSMTLAIKFLTDTPMALAQLREEHDEIRKRKREGEALDWIDYKAMPFTQCVVNETLRVGNIISGVFRRAITDIPVKGYTIP KGWKVFVSFRAVHMDQDHFKDARTFNPWRWQNNSGAITSVGNVFTPFGGGGRLCPGYELARVELSVFLHHLVTGFSWEPAEKDKLVFFPTTRTQKRYPIN VRRRGQIRAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	2.8	0.8611
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	4.0	0.8578
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	6.4	0.7420
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	6.5	0.8491
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	8.1	0.7956
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030902 [exp]	8.1	0.7501
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	12.3	0.7448
					Lus10010603 [exp]	12.3	0.7857
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	15.5	0.7712
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	16.7	0.8014

Compare expression of checked genes

Lus10028297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.