Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 127 / 8e-38 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 120 / 6e-35 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT3G51880 120 / 1e-34 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT2G17560 97 / 8e-26 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 84 / 4e-21 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 76 / 2e-17 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23420 73 / 9e-16 HMGB6 high-mobility group box 6 (.1.2) AT4G23800 59 / 2e-10 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G11080 56 / 2e-09 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT3G28730 46 / 8e-06 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040192 [exp] 222 / 2e-74 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 121 / 2e-34 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 114 / 7e-32 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 117 / 2e-31 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10012252 [exp] 110 / 2e-31 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 110 / 6e-31 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035991 [exp] 88 / 2e-22 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016695 [exp] 88 / 8e-22 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10027787 [exp] 87 / 1e-21 AT3G51880 132 / 2e-39 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189900 [exp] 142 / 4e-43 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 135 / 2e-40 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 126 / 4e-37 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 124 / 1e-36 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 122 / 8e-36 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.007G000900 [exp] 80 / 1e-18 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.004G131400 [exp] 68 / 2e-14 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.003G138000 [exp] 59 / 4e-10 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 58 / 4e-10 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10028298 pacid=23166528 polypeptide=Lus10028298 locus=Lus10028298.g ID=Lus10028298.BGIv1.0 annot-version=v1.0 ATGAAATTGTCAAGAGGCAGGGGAAACAAAGACCAGAAGAGGGAAGCAATCCCGGACCCTGTGGAGAACAGGAGAGTTGGGAAAAGGAAGGCAGTAGTGG GGAAAGTTTCAGAGAGTAGCAGCAAGAAGAAGATGGGGAGCATCAATAACATTGAGAAACTTGCTTCTTCAGCAGCAGCCAAGGATCCCAACAAACCAAA GCGACCCGCTACTGCTTTTTTCGTCTTTCTAGAAGAGTTCAGAACGGTTTACAAACAGCAACATCCAAATAACAAAGCTGTCTCCGCTGTGGGGAAAGCT GGAGGGGAGAAGTGGAAATCTTTGTCTAGTGCAGAGAAAGCTCCTTACGAATCGAAGGCAGCAAACAGGAAATCAGAGTACGAGAAGCTTGTCAAGGCCT ATAACAAGAAACAGGAAACCATAAACCACGGCCACGAAGAAGATGATGATGATGATGATGAAGATGCGCTTCAGAAATCGAAGAAATCTAAAGCCAACGG GGCCAAGATTGATGATGAGGAAGACTACGAGGAAGAGGAAGAAGAAGATGATGATGATGGTGGTGAGGGTGAGGAAGAAGATGATGATTGA
AA sequence Show only first row Show all	>Lus10028298 pacid=23166528 polypeptide=Lus10028298 locus=Lus10028298.g ID=Lus10028298.BGIv1.0 annot-version=v1.0 MKLSRGRGNKDQKREAIPDPVENRRVGKRKAVVGKVSESSSKKKMGSINNIEKLASSAAAKDPNKPKRPATAFFVFLEEFRTVYKQQHPNNKAVSAVGKA GGEKWKSLSSAEKAPYESKAANRKSEYEKLVKAYNKKQETINHGHEEDDDDDDEDALQKSKKSKANGAKIDDEEDYEEEEEEDDDDGGEGEEEDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	1.4	0.9076
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	2.0	0.8901
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	2.6	0.7905
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	5.2	0.7854
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	8.3	0.8169
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10006208 [exp]	9.2	0.7757
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	16.8	0.7953
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	19.2	0.7954
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	19.8	0.7706
					Lus10042279 [exp]	20.8	0.8059

Compare expression of checked genes

Lus10028298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.