Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36610 161 / 2e-48 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 160 / 4e-48 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 74 / 2e-15 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 64 / 4e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 64 / 9e-12 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 63 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 62 / 3e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 61 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 59 / 4e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 51 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041747 [exp] 245 / 6e-81 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 103 / 2e-26 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 71 / 3e-14 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 71 / 4e-14 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10033451 [exp] 67 / 3e-13 AT5G09430 209 / 2e-70 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 67 / 9e-13 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 64 / 9e-12 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 63 / 2e-11 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 62 / 4e-11 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024400 [exp] 178 / 5e-55 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 169 / 3e-51 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 134 / 6e-38 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 133 / 3e-37 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 128 / 8e-36 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 125 / 8e-35 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 120 / 2e-32 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 112 / 2e-29 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 76 / 8e-16 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 66 / 2e-12 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028302 pacid=23166059 polypeptide=Lus10028302 locus=Lus10028302.g ID=Lus10028302.BGIv1.0 annot-version=v1.0 ATGGTGAACCTAGTGGCAGCACAAAAGCCATTGGTAAACTTCATGATGAAAATGGCCGGTGTCAAAACCCACACCGTCGAAATCCAGCCAGGCACCCACA TGAACTTCTGGGTTCCCATCGAAACCCTCCCCACCAAAAACGACACAAAAAACAATAAGGACGGCGCCGGGAACGTATCAACCAAACCTCCGAAAAAACC GGTGGTGGTCCTGGTCCACGGCTTCGCAGGGGAAGGAATAGTGACGTGGCAGTTCCAGGTGGGCGCGATGACCAAGAACTACTCGGTCTACGTCCCGGAC CTGCTCTTCTTCGGCGGTTCGGTGTCGGACAGCTCGGACCGATCCCCGAGGTTCCAGGCGGAGACGTTGGCGAAGGGGCTGAGGAAGCTAGGGGTGGAAG TGATGTTCAGCAACAGGAAGGAAAGAGGGGAGCTCCTGGAAGGACTGGTGATAAGCAACCAAGACACTACTATTCCTAAATTCCAACAGAGGATACATCT GCTGTGGGGAGAGAATGATCAAATCTTCCAGCTAGACCTAGCTCACAACATGAAACAGGAATTGGGAGAGAAGGCAACAGTGGAAAGCATAAGCAAAGCA GGGCATTTGGTTCACCTGGAACGTCCCTGCGCCTACAACAAATGTCTCCAAAAAATTCTCGCAACTCTACACTCTGAGATCCACAGCAACACCAAGTAA
AA sequence Show only first row Show all	>Lus10028302 pacid=23166059 polypeptide=Lus10028302 locus=Lus10028302.g ID=Lus10028302.BGIv1.0 annot-version=v1.0 MVNLVAAQKPLVNFMMKMAGVKTHTVEIQPGTHMNFWVPIETLPTKNDTKNNKDGAGNVSTKPPKKPVVVLVHGFAGEGIVTWQFQVGAMTKNYSVYVPD LLFFGGSVSDSSDRSPRFQAETLAKGLRKLGVEVMFSNRKERGELLEGLVISNQDTTIPKFQQRIHLLWGENDQIFQLDLAHNMKQELGEKATVESISKA GHLVHLERPCAYNKCLQKILATLHSEIHSNTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	2.0	0.8431
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	16.5	0.8183
					Lus10004923 [exp]	22.6	0.7666
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	28.1	0.7391
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	29.4	0.7381
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	31.5	0.7649
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	35.7	0.7343
AT2G44210			Protein of Unknown Function (D...		Lus10005502 [exp]	36.2	0.6698
					Lus10026808 [exp]	39.1	0.7300
					Lus10038805 [exp]	39.4	0.6962

Compare expression of checked genes

Lus10028302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.