Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75220 631 / 0 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 618 / 0 Major facilitator superfamily protein (.1) AT5G18840 346 / 4e-114 Major facilitator superfamily protein (.1) AT1G54730 341 / 3e-112 Major facilitator superfamily protein (.1.2.3) AT2G48020 340 / 4e-112 Major facilitator superfamily protein (.1.2) AT3G05150 317 / 6e-103 Major facilitator superfamily protein (.1) AT3G05400 298 / 1e-95 Major facilitator superfamily protein (.1.2) AT5G27360 298 / 2e-95 SFP2 Major facilitator superfamily protein (.1) AT1G08930 294 / 9e-94 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT4G04750 293 / 9e-94 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041748 [exp] 843 / 0 AT1G75220 697 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10001656 [exp] 552 / 0 AT1G75220 707 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10002534 [exp] 548 / 0 AT1G75220 711 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10008183 [exp] 350 / 1e-115 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 342 / 1e-112 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 342 / 2e-112 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029629 [exp] 335 / 3e-110 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033812 [exp] 332 / 6e-109 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 326 / 5e-107 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024300 [exp] 679 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 622 / 0 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 358 / 1e-118 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 355 / 2e-117 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.014G136600 [exp] 354 / 3e-117 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 353 / 8e-117 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 321 / 1e-104 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 315 / 5e-102 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 311 / 2e-100 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 295 / 2e-94 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10028303 pacid=23166135 polypeptide=Lus10028303 locus=Lus10028303.g ID=Lus10028303.BGIv1.0 annot-version=v1.0 ATGAGTTCGAGGGAGGACGCCGATGAGGCCAACCTGAAGAAGCCGTTCCTCCACACGGGGAGCTGGTACAAAATGGGCTCCCGCCAGTCCAGCAGCATGA TGGGCTCCTCCACCTACATCCGCGACGGCGCCATTTCCGTCGTCCTCTGCGTCATGATCGTCGCCCTAGGCCCTATTCAATTCGGCTTCACTTGTGGATA CTCTTCGCCTACCCAATCGGAGATCATTAACGACCTACAGCTTTCCATTTCAGAGTTCTCTGTCTTTGGTTCTTTATCCAATGTTGGCGCCATGGTTGGG GCAATTGCCAGTGGTCAGATTGCGGAATATATGGGCCGGAAAGGGTCCCTAATGATTGCCGCTATTCCGAACGTAATTGGGTGGCTAAGCATATCGTTTG CCAAAGATTCGTCCTTCTTGCTAATGGGAAGGTTGTTGGAAGGTTTTGGTGTCGGGATCATCTCATATACGGTGCCCGTGTATATTGCGGAGATATCACC TCAGAATATGAGGGGCAGCCTTGGATCTGTTAACCAGCTCTCCGTTACCATTGGGATATTGCTGGCCTATCTATTGGGACTTTTTGTTAATTGGAGAGTT CTTGCAGTGTTGGGAAGTTTGCCTTGTATAATTTTGATACCTGGCTTGTTCTTTATACCAGAATCTCCTCGGTGGCTGGCTAAAATGGGAATGACAGAAG AATTTGAAACGTCGTTGCAAGTTTTACGAGGTTTCGATACGGACATCACTGCCGAAGTAAATGAAATTAAGAACTGGATCAGTCATGAGTCAATAACCTC AGTAAAGTTTGACAAGGTAACCAACAATGACTGCACATGTATTGCAGAGATCAGTGGCTTCATCAACCAGAAGAACAACAATTCGATTCGCAGATCTCAG ACGGAGGGGATACTGGTTTCCTTTGATGGTAGACTGGTAGGCATAGGGCTGCTTCTTCTCCAGCAACTCAGTGGCATAAATGGGATCCTGTTTTATTCCA CTAACATCTTTAAAAATGCTGGGGTTTCCAACAGCAATCTTGCTACAGTTGGAGTTGGCGCAATCCAGGTTGTTGCTACCGGGATCACCACATGGTTGAT GGATAAGGCTGGACGGAGGCTGCTTCTTATTATATCCACTACTGGGATTTGTCTCAGCCTGTTGCTTGTTTCAGTTGCCTTCTTTGTGGAGGGCTCAGTA TCTCCAGATTCTGATTTGTATGGGACGATGGGAATGCTATCACTAGTGGGCCTTGTGTCTATGGTCATCTTCTTCTCTTTCGGACTTGGAGCAATTCCCT GGATTATAATGTCCGAGATCCTCCCTGTAAGTATAAAAGGACTAGCTGGAAGTTTCGCAACACTGTTGAATTGGTTAGCTTCCTGGATAGTTACCATGAC TGCAAACCTGCTACTCAACTGGAGCACCGGAGGAACCTTTACTATTTACACAGTGGTGAGCGCATTCACAGTACTTTTCGTCACTCTCTGGGTTCCTGAA ACCAAAGGAAGAACCCTGGAAGAGATCCAGTCGTCCTTCAGATAG
AA sequence Show only first row Show all	>Lus10028303 pacid=23166135 polypeptide=Lus10028303 locus=Lus10028303.g ID=Lus10028303.BGIv1.0 annot-version=v1.0 MSSREDADEANLKKPFLHTGSWYKMGSRQSSSMMGSSTYIRDGAISVVLCVMIVALGPIQFGFTCGYSSPTQSEIINDLQLSISEFSVFGSLSNVGAMVG AIASGQIAEYMGRKGSLMIAAIPNVIGWLSISFAKDSSFLLMGRLLEGFGVGIISYTVPVYIAEISPQNMRGSLGSVNQLSVTIGILLAYLLGLFVNWRV LAVLGSLPCIILIPGLFFIPESPRWLAKMGMTEEFETSLQVLRGFDTDITAEVNEIKNWISHESITSVKFDKVTNNDCTCIAEISGFINQKNNNSIRRSQ TEGILVSFDGRLVGIGLLLLQQLSGINGILFYSTNIFKNAGVSNSNLATVGVGAIQVVATGITTWLMDKAGRRLLLIISTTGICLSLLLVSVAFFVEGSV SPDSDLYGTMGMLSLVGLVSMVIFFSFGLGAIPWIIMSEILPVSIKGLAGSFATLLNWLASWIVTMTANLLLNWSTGGTFTIYTVVSAFTVLFVTLWVPE TKGRTLEEIQSSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	0	1
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	1.0	0.9854
AT1G27290			unknown protein		Lus10003121 [exp]	3.0	0.9547
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	3.7	0.9596
AT5G59960			unknown protein		Lus10004947 [exp]	3.9	0.9357
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	4.9	0.9342
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	4.9	0.9371
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	5.9	0.9321
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	9.0	0.9310
AT1G68490			unknown protein		Lus10038934 [exp]	9.2	0.9161
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	10.4	0.8928

Compare expression of checked genes

Lus10028303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.