Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44310 60 / 6e-10 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT4G21020 45 / 4e-05 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G72100 43 / 0.0004 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT4G36600 42 / 0.0005 Late embryogenesis abundant (LEA) protein (.1) AT3G15670 41 / 0.0006 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041750 [exp] 439 / 2e-154 AT1G72100 55 / 3e-08 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122400 [exp] 46 / 2e-05 AT4G36600 92 / 3e-20 Late embryogenesis abundant (LEA) protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028304 pacid=23166032 polypeptide=Lus10028304 locus=Lus10028304.g ID=Lus10028304.BGIv1.0 annot-version=v1.0 ATGGCGATGACGATGACGATGAAGGTCCGAGACAGAGGGTTAGTGACGATGATGGCGGTGGTGTTATGCCTTGCGTTGACAGCTGAGGTTTGCCACGGGT GGGGGAGCGACAGCGACGGGCCCGGGTTATGGGACAAGACAAAGGAGACAGTGAGTCATGCAGCCGGTTCAGTCAAGGAGAAGACCGGCGACGTCGTGGA GGGCGCTCAGGGCTGGGCTAACAAACACATCTCATCGACAATGAATTTGGGAGCGGACACTACCGAAAGTGTTGGCGCCGCCGGAGGGGACAAGGCACAA GGTGCCAAGGAGATTTACAGAGATGCCAGGGACAAGGCCTATGACACCGCTGGCAAAGTCGGTTCCGCCGGAATGGACAAAGCAGAAGATACCAAGATAA AGATGTCTGAGTTGGGCACCGCCGGTCAAGAAAAGGCTGGGAATGCAAAGGAGAAGGTCAAGCACGTCGCCGGCGAGGTTGGGGCCGCCGGTAGAGACAA GGCAGAGGATGCAAAAGAGAAGGTCAAACACGTCGCCGGTGAAGTTGGTGCCGCCAGCAGAGACAAGGCAGAGGATGCAAAAGAGAAGGTCAAACACGTC GCCGGTGAAGTTGGTGCCGCCAGCAGAGACAAGGCAGAGGATGCAAAAGAGAAGGTCAAACACGTCGCCGGTGAAGTTGGTGCCGCCAGCAGAGACAAGG CAGAGGATGCCACAGCGAAGTTGTCGGCCATGGGCGCCGCCGGTAGGGACAAGGCAGAGGATGCAAAAGAAAAGGTCAAACACGTCGCCGGTGAAGTTGG TGCCGCCAGCAGAGACAAGGCAGAAGATGCCAAAGGGAAGTTGTCTGCCATGGGCGCCGCCGGTAGGGAGAAGGCAGAAGATGCGAAGGAGAAGGTGAAG CAAGCCACCGTCAATGTCAGAGACAAGGCAGAGGAAGCAAAGGAAAAAGCCAAGCATGTGGCAGGGGATGTTGGCGCGGCCGCCAATGATAAGGCAGAAG ATGGGAAAGAGAAGGTGTCACAGGCAGCCGAAGATGCGCGTGCCAACGGCGGGGAGAAGGCGGAAGGTGCCAAGGACATTTATGGGAAAGTGAAGGAGAA GCTGTCGCAAGCGACTGGAATCGGCACCAAGTCGAAGGATGAGAAGGGTGGCGAGCTTTAA
AA sequence Show only first row Show all	>Lus10028304 pacid=23166032 polypeptide=Lus10028304 locus=Lus10028304.g ID=Lus10028304.BGIv1.0 annot-version=v1.0 MAMTMTMKVRDRGLVTMMAVVLCLALTAEVCHGWGSDSDGPGLWDKTKETVSHAAGSVKEKTGDVVEGAQGWANKHISSTMNLGADTTESVGAAGGDKAQ GAKEIYRDARDKAYDTAGKVGSAGMDKAEDTKIKMSELGTAGQEKAGNAKEKVKHVAGEVGAAGRDKAEDAKEKVKHVAGEVGAASRDKAEDAKEKVKHV AGEVGAASRDKAEDAKEKVKHVAGEVGAASRDKAEDATAKLSAMGAAGRDKAEDAKEKVKHVAGEVGAASRDKAEDAKGKLSAMGAAGREKAEDAKEKVK QATVNVRDKAEEAKEKAKHVAGDVGAAANDKAEDGKEKVSQAAEDARANGGEKAEGAKDIYGKVKEKLSQATGIGTKSKDEKGGEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44310			Late embryogenesis abundant pr...		Lus10028304 [exp]	0	1
					Lus10016420 [exp]	4.8	0.8323
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	5.7	0.7898
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	7.3	0.7720
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	9.1	0.7950
					Lus10042412 [exp]	9.5	0.7658
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	12.0	0.7934
AT3G09450			unknown protein		Lus10025334 [exp]	15.3	0.7795
AT2G01800			COP1-interacting protein-relat...		Lus10000702 [exp]	15.9	0.7710
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	24.2	0.7057
AT1G07860			unknown protein		Lus10036143 [exp]	24.7	0.6986

Compare expression of checked genes

Lus10028304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.