Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36550 389 / 6e-125 ARM repeat superfamily protein (.1) AT1G67530 275 / 3e-81 ARM repeat superfamily protein (.1.2) AT1G24330 268 / 7e-79 ARM repeat superfamily protein (.1) AT1G27910 233 / 3e-66 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT3G46510 126 / 6e-30 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 121 / 2e-28 PUB15 Plant U-Box 15 (.1) AT2G28830 116 / 2e-26 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 103 / 8e-23 PUB11 ARM repeat superfamily protein (.1) AT3G07360 101 / 2e-22 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G71020 101 / 2e-22 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041754 [exp] 1273 / 0 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10015801 [exp] 267 / 3e-78 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 264 / 3e-77 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 263 / 5e-77 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 263 / 9e-77 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10012260 [exp] 124 / 2e-29 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 122 / 1e-28 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 118 / 3e-27 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 114 / 5e-26 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122100 [exp] 702 / 0 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 665 / 0 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G228100 [exp] 437 / 4e-143 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 259 / 2e-75 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.010G058000 [exp] 211 / 5e-58 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 131 / 1e-31 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 128 / 1e-30 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 126 / 6e-30 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 114 / 2e-26 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 110 / 8e-25 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10028307 pacid=23165998 polypeptide=Lus10028307 locus=Lus10028307.g ID=Lus10028307.BGIv1.0 annot-version=v1.0 ATGGGATCTGATGCCGCGGAGGAAGTGGAGATTCCTCTTCATTTGTATTCGTTCAAGGTGTATCATTCGATGTGTGGTCGGCTGATGAAGTTGGTTGAAA GGATTAAACAAATGTTTCCGCGGATAGAAGAGTCCCGTCCTCGCTGCTCATCTGGGATAGCGGCACTGGTCTCATTAAGCAATGCCCTTGACCGTGCTAA GCAACTTCTTCAGTATTGCTCTGAGTCAAGCAAACTATACTTGGTAATCACTGGAGAAGCAACAGTTGCAAGATTTTTAAGATCAAGGAAGCTGATGGTG CAAAGTTTGAGTCAGATTCAAACGATGTTTCCTGGGAGCTTGGCTGCTGAGATTTCGCCAATTATAGATGATCTTGAGGAAGCAAACTTTGTAATGGAGA CCTCCGAAGAGGAGGCTGGAAAGGTACTGCTTGAATTGCTTCATCATGGAACTGATTCAGCAGAATCTCAAATGAGAGCTTTTCAAGTTGCTCTCTCAAA CCTTCACATTATCTCCCAGAAGGACGTAGTAATAGAGGCGAGATCTATCAAGAAGCTACTTGATAAAGTTGGTAACAGCAACCAAAACAAAACAAAGATC TTGAAGACCCTTTTCTACCTCTTAAAGAAGTACAGAAACTCGATCCCGGTGAACCATAGAAGTTCTTCAAATGATGATCATGATGCTTCAGCGAACGATC AATCAAGTGAAGCCGGACCTAATATGTTAAGTCATGCTGCACCACCGGAAGAGTTCAGGTGTCCTATATCAAGGAGAGTGATGTATGACCCTGTCATCAT TGCTTCTGGACAAACTTATGAAAGGAAGTGGATACAGAAATGGTTTAATGATGGTAACAGCACGTGTCCCAAGACAAAACTGAAGCTGGAGAACTATTCG GTCGTTCCAAACACTGCTTTGAAAGACCTTATATCAAAGTGGTGTGTGGACTACGGGATCAGCATTGGTGAACCAGTGACACAACCGTTGAAGTCGCTGG ATCTATCATCTGATTCCATTGCTAGCTTAGGCAGTGATATGAATGATCTCCAATTTCATCTGGACATCAGCAGTGTATCATTAGGATCTATGGAAGCTAG TTACTCTTCCAATGCCTCGAGCACTAAGGTCGTAGAAGGTTCAAGGTTGAAGGTGATGGCTGGACATAAGACGTGCGAGTGTAATGCAAACGTGTATGAG AATGACATGGAGTTACTATCTCGGCTCTCACAGCTTCCTTGGGAGTCTCAATGCACCGTCATTCATGACATAAATAGTCACTTGAAATGTGATTGCCAAG CTTGGGATTCAGAGTCATCTAGAAAGTTTATTGAACCTCTGGTTCTACATTTGAGAGATGCACTTGACCAGTTTGATCTAGGAGCCCAGAAGGCTGGATC TAGATTGTTGCTTGCACTACTGAATAAGACTGGAAGTGGAGCATCGTGCTTAAATGAAGATGCCTACAGTTTGCTGGCATCATTCTTGGAGTCCGAAACA CTCGAAGAATCTGTTGCGATTCTGGATGCCTTGTCCGCCAAGCCAAACTGCAGATCCAGAATTGCAGCATCCGGCGCTCCAGTTTCTCTCTTAAAGATTT TGGACCGGGTAGAGAGCAAGGAACTGCAGGAACGTGTCGTCAGGATCTTTTACAACTTGTCTTCAAGTAGTGATGTCTGCTCCAAGTTGGCATCTCTGGG ATGCATTCCAAAGCTAGTTCCTTTCATTAACGACAGCAATGTTACGAGATACTGCATCGTTCTACTGAAGAATCTGTGTGACACGGTAGGTCAGGCTCGG GTTAGCATTGCTGAGACCAATGGCTGCATCTCTTCAATTGCTCAACTGCTGGAGAATGGCAGTGCTGAGGAGCAAGAGCATGCAGTAACTGTGCTCCTTT CACTATGTGCTCAGCGTGATCAGTACTGCCTTTTGCTGATGGATGAAGGTGTTATTCCTTCCCTCTGTAGCATCTCGGTGAACGGGAATGAGAAAGCGAA AGCGAGCGCGTTGGAACTGCTCCGACAGTTGAAAGATGTCGAGTATGAATCCGAGCCAGAAAGAAGTCCTCCTCCTCGCCCTCTTCCTCTTCCTCCTCGA CTTACCGCCGTCGTTGATGAGGATGTTGTTCCTCAAGGTAAAGTAAAGAAGTCCGGATTTCTGAAGAATATAGCAGGGTCTCTTGCATCCAGAAGGAAGA GATAA
AA sequence Show only first row Show all	>Lus10028307 pacid=23165998 polypeptide=Lus10028307 locus=Lus10028307.g ID=Lus10028307.BGIv1.0 annot-version=v1.0 MGSDAAEEVEIPLHLYSFKVYHSMCGRLMKLVERIKQMFPRIEESRPRCSSGIAALVSLSNALDRAKQLLQYCSESSKLYLVITGEATVARFLRSRKLMV QSLSQIQTMFPGSLAAEISPIIDDLEEANFVMETSEEEAGKVLLELLHHGTDSAESQMRAFQVALSNLHIISQKDVVIEARSIKKLLDKVGNSNQNKTKI LKTLFYLLKKYRNSIPVNHRSSSNDDHDASANDQSSEAGPNMLSHAAPPEEFRCPISRRVMYDPVIIASGQTYERKWIQKWFNDGNSTCPKTKLKLENYS VVPNTALKDLISKWCVDYGISIGEPVTQPLKSLDLSSDSIASLGSDMNDLQFHLDISSVSLGSMEASYSSNASSTKVVEGSRLKVMAGHKTCECNANVYE NDMELLSRLSQLPWESQCTVIHDINSHLKCDCQAWDSESSRKFIEPLVLHLRDALDQFDLGAQKAGSRLLLALLNKTGSGASCLNEDAYSLLASFLESET LEESVAILDALSAKPNCRSRIAASGAPVSLLKILDRVESKELQERVVRIFYNLSSSSDVCSKLASLGCIPKLVPFINDSNVTRYCIVLLKNLCDTVGQAR VSIAETNGCISSIAQLLENGSAEEQEHAVTVLLSLCAQRDQYCLLLMDEGVIPSLCSISVNGNEKAKASALELLRQLKDVEYESEPERSPPPRPLPLPPR LTAVVDEDVVPQGKVKKSGFLKNIAGSLASRRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	0	1
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	1.0	0.8335
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	5.2	0.8278
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	6.2	0.8284
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	6.3	0.8247
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	6.3	0.8213
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	6.7	0.8086
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	8.5	0.8189
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	10.2	0.8128
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	10.4	0.7903
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	13.0	0.8102

Compare expression of checked genes

Lus10028307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.