Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18290 343 / 3e-122 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041756 [exp] 394 / 4e-142 AT2G18290 346 / 3e-123 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121700 [exp] 355 / 8e-127 AT2G18290 318 / 2e-112 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1) Potri.007G023500 [exp] 347 / 6e-124 AT2G18290 314 / 9e-111 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF03256 [flax] [poplar] ANAPC10 Anaphase-promoting complex, subunit 10 (APC10)
Representative CDS sequence Show only first row Show all	>Lus10028308 pacid=23166184 polypeptide=Lus10028308 locus=Lus10028308.g ID=Lus10028308.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGTCATCGGATGGGGAAGAGGAAGGTAAAATCACCGGAGGTAGTCAGCATCTGCTAGTGGACGATGACCTCAGAGAGCTAGGTAAAAAGG CAGCTTGGAGCGTCAGCTCTTGTAAAACCGGCAATGGCGTCTCGTCTCTCCGCGATGACAATCTCGACACGTACTGGCAATCGGATGGTGCTCAGCCGCA TTTGGTGAACATTCAATTCCAGAAGAAAGTAAAGCTTCAATTGGTTTCAGTTTATGTTGATTTCAAGCTTGATGAGAGTTATACTCCCAGCAAGATCTCC ATTCGTGCTGGTGATGGATTCCATAACCTGAAGGACATCAAAACTGTGGAACTTGTCAAGCCTACTGGCTGGGTTTACATTTCACTATCTGGAAACGATC CTAGGGAAACCTTTGTAAACACCTTTATGTTGCAAATTGCTGTGCTCTCGAATCATCTTAATGGAAGAGATACTCATATCCGCCAGATTAAAGTCTATGG ACCTCGGCCGAACCCTATTCCGCATCAACCATTTCAGTTCACCTCTACAGAGTTCATCACATACTCTACTGTCAGATGA
AA sequence Show only first row Show all	>Lus10028308 pacid=23166184 polypeptide=Lus10028308 locus=Lus10028308.g ID=Lus10028308.BGIv1.0 annot-version=v1.0 MATESSDGEEEGKITGGSQHLLVDDDLRELGKKAAWSVSSCKTGNGVSSLRDDNLDTYWQSDGAQPHLVNIQFQKKVKLQLVSVYVDFKLDESYTPSKIS IRAGDGFHNLKDIKTVELVKPTGWVYISLSGNDPRETFVNTFMLQIAVLSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSTEFITYSTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10028308 [exp]	0	1
AT5G22120			unknown protein		Lus10008366 [exp]	6.3	0.8106
AT1G16900			Alg9-like mannosyltransferase ...		Lus10028153 [exp]	9.3	0.8299
AT5G40580		PBB2	20S proteasome beta subunit PB...		Lus10014581 [exp]	26.5	0.7955
AT3G57950			unknown protein		Lus10021036 [exp]	31.9	0.8006
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039051 [exp]	34.3	0.7581
AT5G07960			unknown protein		Lus10034695 [exp]	40.7	0.7673
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Lus10022713 [exp]	44.4	0.7805
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10033836 [exp]	51.5	0.7821
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10043155 [exp]	60.9	0.7534
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	86.7	0.7510

Compare expression of checked genes

Lus10028308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.