Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18280 458 / 6e-161 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 407 / 2e-140 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G25280 381 / 1e-129 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT2G47900 369 / 9e-126 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G76900 367 / 4e-124 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G43640 332 / 9e-111 TUB AtTLP5 tubby like protein 5 (.1) AT3G06380 328 / 5e-110 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 328 / 8e-110 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 293 / 5e-96 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 78 / 3e-16 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041757 [exp] 816 / 0 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10014299 [exp] 679 / 0 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10026007 [exp] 672 / 0 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10033209 [exp] 447 / 2e-156 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10010833 [exp] 442 / 2e-154 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10010645 [exp] 438 / 1e-152 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033208 [exp] 436 / 7e-152 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10028579 [exp] 373 / 1e-126 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 370 / 8e-126 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121600 [exp] 570 / 0 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.007G023400 [exp] 563 / 0 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 459 / 6e-161 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 451 / 1e-157 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G192300 [exp] 385 / 2e-131 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 383 / 8e-131 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 379 / 5e-129 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 369 / 1e-125 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 360 / 3e-122 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 301 / 2e-99 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028309 pacid=23165977 polypeptide=Lus10028309 locus=Lus10028309.g ID=Lus10028309.BGIv1.0 annot-version=v1.0 ATGTCTTTCAAAAGCATTTTCCGTGAGTTGAAGGAGATGAAAGATGGGGTTGGGAGTAGGTCTACCCGAGGGGTCGAAGGAGGTAAGCGGTGGCGGGGCA GCCGGGCAAGGTCACATATAGCACCTGATGAAACGTCAATGGCTGAGGCTGAACGATCTTCTCAGCAAGGCCAGTGGGCGGATTTGCCCACAGAGCTGCT TTTCGATATCATCAGCAGGGTGGAAGAGACTGAGACCTCGTGGCCTGGTCGTGCTGCGGTCGTTCATTGCGCTTCCGTTTGTAAGTCCTGGAGAGAAGTA ACGAGGGAGATTGTGCAAACTCCTGAACAGTGTGGGAGGTTCACATTCCCTACATCATTGAAGCAGCCGGGTCCTCGTGAGTCTCCAATACACTGCTACA TAAGAAGAGATCCTGCGACTTCCACTTTCCGGTTGTATGCTGGATTGATGCCTTCTGCGGGGCAGAATGACAAATTGCTTTTAGCTGCAAGAAGAATCAG AAGGACAACTTGCACGGATTTCATAATATCTTTGGTTGCAAATGATTTTTCCCGTTCCAGCAACAACTACGTTGGTAGACTCAGGTCTAACTTTATGGGG ACCAAGTTCACCATATCAGATAGGTTATCTTCGCATGAGCTTCCAACACATTTGGCCAGTGGGGCAAGTCGTAGAGTCCATTCCAGACAGTCGAGGACTT CTGCATTAAACTACAACATAGGCACGATCAATTACGAGCTGAATGTGCTCCGCACGAGAGGGCCAAGGAGAATGCACTGTGTCATTAATTCTATTCCAGT CTCTTCCATGGAAGAAGGAGGGAATGTCCCAACAATGACATCATTGCCGGAGGCAACCAGCGAGCAGTTGTCTCCTTCACCGGCTCCTAAAGGAAGGAGA CCGGCCTCAGACGTAAATTCCACCAGCCCGTCAGAGTCACCGATGGTAATCCCTGGCTCGGGAGAGCCCCTAGTTCTGAAAAATCGGTCTCCTAGATGGC ACGAGCAGCTCCAATGTTGGTGCTTAAATTTCAAGGGGCGTGTTACCGTTGCTTCTGTTAAGAACTTCCAACTCTCTGCTGCATTTGAACCCCACCACAA TGTATCGGCTGAAGAACAAGATAGAGTGCTCCTACAATTTGGGAAAATTGGGAAAGACATGTTCACCATGGATTATAGCTACCCGCTGTCTGCATTTCAA GCGTTTGCTCTTTGCCTGAGCAGCTTTGATACCAAACCAACCTGTGAATGA
AA sequence Show only first row Show all	>Lus10028309 pacid=23165977 polypeptide=Lus10028309 locus=Lus10028309.g ID=Lus10028309.BGIv1.0 annot-version=v1.0 MSFKSIFRELKEMKDGVGSRSTRGVEGGKRWRGSRARSHIAPDETSMAEAERSSQQGQWADLPTELLFDIISRVEETETSWPGRAAVVHCASVCKSWREV TREIVQTPEQCGRFTFPTSLKQPGPRESPIHCYIRRDPATSTFRLYAGLMPSAGQNDKLLLAARRIRRTTCTDFIISLVANDFSRSSNNYVGRLRSNFMG TKFTISDRLSSHELPTHLASGASRRVHSRQSRTSALNYNIGTINYELNVLRTRGPRRMHCVINSIPVSSMEEGGNVPTMTSLPEATSEQLSPSPAPKGRR PASDVNSTSPSESPMVIPGSGEPLVLKNRSPRWHEQLQCWCLNFKGRVTVASVKNFQLSAAFEPHHNVSAEEQDRVLLQFGKIGKDMFTMDYSYPLSAFQ AFALCLSSFDTKPTCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	0	1
					Lus10000293 [exp]	4.0	0.6889
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	4.1	0.7826
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	6.0	0.7358
AT3G02900			unknown protein		Lus10009524 [exp]	6.9	0.7338
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	10.4	0.7394
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	14.1	0.6996
AT3G27520			unknown protein		Lus10003664 [exp]	14.5	0.7109
AT2G25920			unknown protein		Lus10001457 [exp]	14.7	0.6868
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	15.5	0.7187
AT1G78810			unknown protein		Lus10028833 [exp]	19.4	0.6320

Compare expression of checked genes

Lus10028309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.