Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66530 485 / 1e-174 Galactose mutarotase-like superfamily protein (.1.2) AT5G57330 156 / 3e-45 Galactose mutarotase-like superfamily protein (.1) AT4G23730 138 / 1e-38 Galactose mutarotase-like superfamily protein (.1) AT4G25900 134 / 9e-37 Galactose mutarotase-like superfamily protein (.1) AT3G01590 133 / 2e-36 Galactose mutarotase-like superfamily protein (.1.2) AT3G61610 131 / 1e-35 Galactose mutarotase-like superfamily protein (.1) AT5G14500 130 / 2e-35 aldose 1-epimerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041758 [exp] 638 / 0 AT5G66530 485 / 1e-174 Galactose mutarotase-like superfamily protein (.1.2) Lus10020015 [exp] 156 / 4e-45 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 149 / 2e-42 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 145 / 3e-41 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 144 / 1e-40 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 142 / 3e-40 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10014621 [exp] 141 / 9e-40 AT5G14500 490 / 2e-176 aldose 1-epimerase family protein (.1) Lus10032084 [exp] 143 / 2e-39 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1) Lus10012640 [exp] 140 / 5e-39 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023200 [exp] 516 / 0 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.018G089800 [exp] 164 / 3e-48 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 159 / 1e-46 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 152 / 7e-44 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 151 / 2e-43 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 144 / 5e-41 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.002G167200 [exp] 142 / 5e-40 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 140 / 2e-39 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10028310 pacid=23166069 polypeptide=Lus10028310 locus=Lus10028310.g ID=Lus10028310.BGIv1.0 annot-version=v1.0 ATGGCGATCGTTTCCGTCCCCTCTTCTTTGCCTCATCTCAATCTCCGCCGAGCCACCCGAGCCTCTGGTGTTGCTTCCACACGGACAAACAGAATTATGG CGTCGGCGTCGGGAGTGAAGTTCACAGAAGGTGAAGGTAACTTGCCCAAAGTCGTGCTCACTTCTCCTCATGGTAGTGAGGCGGAGATTTATCTATACGG AGGCTGCTTGACATCTTGGAAAGTTTCCGGCGGCAAAGATCTTCTTTTCGTTAGGCCGGATGCTGTATTCAATAAGAAGAAGCCAATCAGTGGAGGCCTT CCACATTGTTTCCCACAGTTTGGACCAGGAGCTATTCAGCAGCATGGATTTGGGAGGAATATGGATTGGTCAGTTGTTGATTCTGAGAACGTGGAGGGTG ATGCTTTTGTAACACTTGAGCTCAAGGATGAACCTTACAGTCGAGCTATGTGGGATTTTGGTTTCCAAGCACTATACAAGGTCATTCTAAATGCAAAGAG CATTTCCACGGAACTAAAGATTACAAATACAGACAGCAAGCCGTTTTCATTTACCACAGCTTTGCATACGTATTTCAGTGCATCCGTAGCAGGAGCATCA GTGAAAGGTTTGAAAGGTTGCAGGACTTTGAACAAAGATCCAGATCCTAACAATCCAGTGGAGGGACAAGAGGACAGGGACGTGGTCACCTTCCCTGGAT TTGTAGACTGCGTTTATCTAGGTGCACCAGCTGAGCTTTCCCTTGATAATGGCTTGGGCGATGTGATAAGCATCAAGAATACCAATTGGACGGATGCTGT TCTATGGAATCCACACCTTCAGATGGAAGCATGTTACAAAGACTTTGTTTGTGTAGAAAATGCCAAGATTGGGAAGGTTGATCTGCAGCCTAATCAATCC TGGGTAGCTACACAACAGCTTACTCTCACCTGA
AA sequence Show only first row Show all	>Lus10028310 pacid=23166069 polypeptide=Lus10028310 locus=Lus10028310.g ID=Lus10028310.BGIv1.0 annot-version=v1.0 MAIVSVPSSLPHLNLRRATRASGVASTRTNRIMASASGVKFTEGEGNLPKVVLTSPHGSEAEIYLYGGCLTSWKVSGGKDLLFVRPDAVFNKKKPISGGL PHCFPQFGPGAIQQHGFGRNMDWSVVDSENVEGDAFVTLELKDEPYSRAMWDFGFQALYKVILNAKSISTELKITNTDSKPFSFTTALHTYFSASVAGAS VKGLKGCRTLNKDPDPNNPVEGQEDRDVVTFPGFVDCVYLGAPAELSLDNGLGDVISIKNTNWTDAVLWNPHLQMEACYKDFVCVENAKIGKVDLQPNQS WVATQQLTLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	0	1
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	3.0	0.8785
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10029654 [exp]	5.8	0.8452
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	6.6	0.8837
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Lus10016781 [exp]	8.1	0.8789
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	8.5	0.8600
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	8.7	0.8771
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10009181 [exp]	9.5	0.8722
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10006267 [exp]	14.0	0.8742
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10012892 [exp]	18.5	0.8680
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	18.7	0.8704

Compare expression of checked genes

Lus10028310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.