Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18250 223 / 3e-75 ATCOAD 4-phosphopantetheine adenylyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041759 [exp] 290 / 1e-101 AT2G18250 270 / 4e-94 4-phosphopantetheine adenylyltransferase (.1) Lus10026004 [exp] 248 / 5e-85 AT2G18250 267 / 2e-92 4-phosphopantetheine adenylyltransferase (.1) Lus10014296 [exp] 230 / 1e-77 AT2G18250 249 / 5e-85 4-phosphopantetheine adenylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121200 [exp] 217 / 5e-73 AT2G18250 268 / 6e-93 4-phosphopantetheine adenylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10028311 pacid=23165980 polypeptide=Lus10028311 locus=Lus10028311.g ID=Lus10028311.BGIv1.0 annot-version=v1.0 ATGGCAGCTGAGGATGAAACGGCGGTCAACTACAAGATTTCCCCGCCAAACACGTACGGATCCGTGGTGCTCGGCGGCACGTTTGATCGGCTTCACGACG GCCACCGCCTTTTCCTCAAGGCAGCAGCCGAGCTGGCTAAGGAAAGGGTCGTTATTGGAGTTTGCCACGGCCCTATGCTCACCAAAAAAAAGTTTGCAGA CCTGATACAGCCTGTTGATCAAAGGGTGCAGAATGTTGAACACTTCATCAAGTCTATCAAGCCAGAGCTCCTGGTGCAAGCTGAACCAATCATTGATCCA TATGGACCTTCAACTGTCCTCCAAGATTTGGAAGCTATAGTTGTTAGCAAAGAGACTGTACCAGGCGGCCTGGCAGTTAACAGGAAGAGAGCTGAGAAAG GATTTTCACAGCTCAAGATTGAAGTTGTGGATCTAATTTCTGACGGATCCAGTGGAGAGAAGCTGAGTTCCTCAACTTTGAGGCAACTCGATGCCGAGAA GGCTAAACAACAAGCAACATAG
AA sequence Show only first row Show all	>Lus10028311 pacid=23165980 polypeptide=Lus10028311 locus=Lus10028311.g ID=Lus10028311.BGIv1.0 annot-version=v1.0 MAAEDETAVNYKISPPNTYGSVVLGGTFDRLHDGHRLFLKAAAELAKERVVIGVCHGPMLTKKKFADLIQPVDQRVQNVEHFIKSIKPELLVQAEPIIDP YGPSTVLQDLEAIVVSKETVPGGLAVNRKRAEKGFSQLKIEVVDLISDGSSGEKLSSSTLRQLDAEKAKQQAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	4.7	0.9710
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	4.9	0.9689
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	5.1	0.9704
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	5.9	0.9645
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	5.9	0.9661
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	6.5	0.9703
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	9.2	0.9660
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	10.6	0.9594
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	13.5	0.9537
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	14.1	0.9630

Compare expression of checked genes

Lus10028311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.