Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 797 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 794 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 763 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025863 [exp] 886 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 886 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 877 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 843 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 840 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 807 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 806 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 197 / 5e-62 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 174 / 3e-51 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 810 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 805 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 804 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10028312 pacid=23166064 polypeptide=Lus10028312 locus=Lus10028312.g ID=Lus10028312.BGIv1.0 annot-version=v1.0 ATGGCAGACAGCGAGGACAAGAACATTGAGATTTGGAAGATAAAGAAGCTTATAAAGTCACTTGAAGCTGCTCGAGGAAATGGAACGAGCATGATTTCGC TCGTCATACCACCTCGTGATCAGATATCACGTATTGCAAAGATGCTCGGTGATGAGTATGGAACTGCTTCTAATATTAAGAGCAGGGTCAATCGTCAGTC TGTACTTGGTGCTATCACATCTGCTCAGCAGAGGCTTAAGCTCTACAACAGGGTTCCTACAAATGGCCTTGTGTTGTACACTGGGACTATTTTGACTGAT GATGGAAAGGAAAAGAAAGTGACTATGGACTTTGAGCCTTTTAAACCAATTAACTCATCTCTCTACCTTTGCGACAACAAGTTTCATACTGAAGCATTGA ATGAACTTTTGGAGTCCGATGACAAGTTTGGTTTTATCGTCATGGATGGTAATGGCACTTTGTTCGGAACACTGAGTGGAAACACCAGGGAAATTCTGCA TAAGTTCTCGGTTGACTTGCCTAAGAAACATGGAAGAGGAGGACAGTCAGCCCTTCGTTTTGCTAGACTCCGAATGGAGAAGCGCCACAATTATGTGAGG AAGACGGCTGAACTTGCTACGCAGTTTTACATAGACCCGTCCACCAGCCAGCCAAATGTATCTGGCCTAATTCTTGCTGGATCTGCTGACTTTAAGACTG AGCTAGGTCAGTCTGATATGTTTGATGCTAGACTGGGAGCAAAGATTCTGAATGTTGTGGATGTGTCCTATGGCGGAGAAAATGGATTTAATCAGGCAAT CGAGCTTTCTTCTGAGATTTTGTCCAATGTGAAGTTTATACAGGAGAAGAAGCTGATAGGAAAGTACTTTGAGGAGATCAGTCAAGATACCGGAAAATAT GTATTTGGTGTGGATGATACATTGGCAGCATTGGATATGGGTGCAGTTGAGATTCTCATAGTGTGGGAGAATCTAGAGATCAACAGGTATGAATTGAAGA ACAGTGCCAACGGTGAGATTGTAGTCAAACATTTTACCAAAGAGCAAGAGACCAATGAAAGCAACTTTAGGGATTCATCCACTTCAGCTGAACTGGAGGT TCAAGACAAGATGCCTCTGCTCGAGTGGTTTGCTAATGAGTACAAGCGATTTGGTTGCACTCTTGAGTTTGTAACTAACAAATCACAGGAAGGGTCCCAA TTCTGCAGGGGGTTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTCGACATGAGATCGTTTGATGATGTTTCCGATGATGAGGGAGGAGTTTATGATT CGGAATAG
AA sequence Show only first row Show all	>Lus10028312 pacid=23166064 polypeptide=Lus10028312 locus=Lus10028312.g ID=Lus10028312.BGIv1.0 annot-version=v1.0 MADSEDKNIEIWKIKKLIKSLEAARGNGTSMISLVIPPRDQISRIAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPTNGLVLYTGTILTD DGKEKKVTMDFEPFKPINSSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVR KTAELATQFYIDPSTSQPNVSGLILAGSADFKTELGQSDMFDARLGAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKKLIGKYFEEISQDTGKY VFGVDDTLAALDMGAVEILIVWENLEINRYELKNSANGEIVVKHFTKEQETNESNFRDSSTSAELEVQDKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQ FCRGFGGIGGILRYQVDMRSFDDVSDDEGGVYDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028312 [exp]	0	1
AT2G32760			unknown protein		Lus10022576 [exp]	3.2	0.8233
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	8.1	0.8335
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10003964 [exp]	11.9	0.8286
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	15.1	0.8301
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	19.8	0.8187
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	24.7	0.7837
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	25.7	0.7912
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	27.5	0.7981
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	40.1	0.8076
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	42.1	0.8147

Compare expression of checked genes

Lus10028312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.