Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 171 / 2e-52 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 170 / 7e-52 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 139 / 5e-40 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041760 [exp] 200 / 2e-63 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 197 / 2e-62 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 197 / 2e-62 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 197 / 3e-62 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 183 / 5e-57 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 182 / 5e-56 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 166 / 3e-50 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 165 / 5e-50 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 173 / 6e-53 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 172 / 1e-52 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 169 / 1e-51 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3
Representative CDS sequence Show only first row Show all	>Lus10028313 pacid=23166167 polypeptide=Lus10028313 locus=Lus10028313.g ID=Lus10028313.BGIv1.0 annot-version=v1.0 ATGATGGATTCAAACGGACAATTAGGCTTTCTTCTGAGATTTTGTCCCATGGATTCAAACAGGCAATTCGGCTTTCTTCTGAGATTTTGTCCCATGGATT CAAACAGGCAATTAGACCAGGAGAAGAAGCTGATGGGAAAGTACTTTGAAAAGGTGACGCAAGATACCGGAAAATATGTATTTGGTGTCGATGATACATT GACAACTTTGGATATGGGTGCAGTCGAGATTCTCATAGTGTGGGAGAATCTGGAGATCAACAGGTATGAGTTGAAGAACAGTACCAACGGAGAGATTGTT GTGAAATATTTTACGAAAGAACAAGAGACTAATGAAAGCAACTTTAGGGATTCAACCACTTCAGCTGAACTGGAGGCTCAGGACAAGATGCCTCTGCTCG AGTGGTTTGCTAATGAGTACAAGTGA
AA sequence Show only first row Show all	>Lus10028313 pacid=23166167 polypeptide=Lus10028313 locus=Lus10028313.g ID=Lus10028313.BGIv1.0 annot-version=v1.0 MMDSNGQLGFLLRFCPMDSNRQFGFLLRFCPMDSNRQLDQEKKLMGKYFEKVTQDTGKYVFGVDDTLTTLDMGAVEILIVWENLEINRYELKNSTNGEIV VKYFTKEQETNESNFRDSTTSAELEAQDKMPLLEWFANEYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028313 [exp]	0	1
AT2G17580			Polynucleotide adenylyltransfe...		Lus10035995 [exp]	14.5	0.6015
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	16.6	0.5853
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	17.6	0.5989
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	41.0	0.5676
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10020453 [exp]	45.8	0.5812
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013056 [exp]	49.6	0.5256
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	57.1	0.5495
					Lus10009766 [exp]	57.5	0.4889
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10014550 [exp]	82.9	0.5153
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	93.7	0.5252

Compare expression of checked genes

Lus10028313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.