Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18245 216 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) AT3G19970 194 / 4e-59 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026001 [exp] 297 / 1e-99 AT2G18245 283 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10041762 [exp] 211 / 2e-69 AT2G18245 102 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) Lus10017376 [exp] 195 / 3e-59 AT3G19970 534 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010171 [exp] 192 / 5e-58 AT3G19970 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10014294 [exp] 0 / 1 AT2G18245 195 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023000 [exp] 259 / 2e-84 AT2G18245 330 / 2e-110 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G075400 [exp] 179 / 3e-53 AT3G19970 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G089000 [exp] 179 / 5e-53 AT3G19970 509 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05705 [flax] [poplar] DUF829 Eukaryotic protein of unknown function (DUF829)
Representative CDS sequence Show only first row Show all	>Lus10028314 pacid=23166144 polypeptide=Lus10028314 locus=Lus10028314.g ID=Lus10028314.BGIv1.0 annot-version=v1.0 ATGGGGAATCCTGCTCCTGAAACTGGCGGGTTCTTCGCTTGGCATCCAGCTCCTGAAACTGTCGGCGGGAGTGTATTCGGACGGAAAGATGCTGAAACGA CTGTCGTTTTGCTGGGGCGGCTGGATGGGAAGCAGAAGCACCTCAGGAGGTACGTGGAATGGTACAATTCGCAAGGGATTCACGCGATTACGTTCGGCGT TGAAGTGGGAGAGCTGCTAGGTTCTGATTCAGGTGAAAGAATGGAGAGACGGATCACTGCATTGGCTGAAGACATCACTTCTTGGGTCACAGAAGACGGG TTGAACGGATATCGATGTTTGCTGTTTCACACTTTCAGCAACACTGGCTTTTTGACTTATGCTTACGTTATTGAAATTCTGCTAGGTAAAGCAGGAGGCG TGACAGATAAAGTCAGAGGTTGCGTTGTTGATTCAGGAGGCTTCGCTGCAGCACTCTTGAAAAGAAACAGCTTGACAAGCCAAGAAGCAAGCAAGCAAAA TGCAGATCAAGGAGACAAGACCGTAACATTGCTGGTAGGAGTACTAGAAAAGTCGTTTGCTGTTGTTCTGAAATCACCACAAGTTGACCAGAAGTTGCGG AAGATGCTTGTTGCTCTGTCGAAGAACCAACTGTGTTATCCTCGTCTTTACTTGTATAGTACCGGAGATAGTATCGTACCTCATGAAGCCATCAAAGCTG TAATCATGGAGGAAAAAGGAAAGGGAAGAAAGGTGGAGTCCCATGACTTTGGTTCATCACCACATGTAGATCCCTACAGAAGCTTCCCAGAAACGTATAT TTCACTTCTTCAAAAGTTTCTTAAACAATGCTTTTCAATATCGGAACCGGCCGGCATAAAGTGA
AA sequence Show only first row Show all	>Lus10028314 pacid=23166144 polypeptide=Lus10028314 locus=Lus10028314.g ID=Lus10028314.BGIv1.0 annot-version=v1.0 MGNPAPETGGFFAWHPAPETVGGSVFGRKDAETTVVLLGRLDGKQKHLRRYVEWYNSQGIHAITFGVEVGELLGSDSGERMERRITALAEDITSWVTEDG LNGYRCLLFHTFSNTGFLTYAYVIEILLGKAGGVTDKVRGCVVDSGGFAAALLKRNSLTSQEASKQNADQGDKTVTLLVGVLEKSFAVVLKSPQVDQKLR KMLVALSKNQLCYPRLYLYSTGDSIVPHEAIKAVIMEEKGKGRKVESHDFGSSPHVDPYRSFPETYISLLQKFLKQCFSISEPAGIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	8.7	0.6926
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	9.5	0.7547
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	10.5	0.6767
AT2G38905			Low temperature and salt respo...		Lus10023489 [exp]	13.6	0.6251
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	14.1	0.6708
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	14.9	0.6915
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	15.9	0.7083
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	21.0	0.7002
AT1G10310			NAD(P)-binding Rossmann-fold s...		Lus10026260 [exp]	25.8	0.6800
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	29.5	0.6605

Compare expression of checked genes

Lus10028314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.