Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36530 527 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 168 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 148 / 3e-41 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 151 / 2e-40 DNA photolyases;DNA photolyases (.1) AT5G13800 134 / 6e-35 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT1G13820 77 / 1e-15 alpha/beta-Hydrolases superfamily protein (.1) AT3G10840 66 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 66 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 64 / 4e-11 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 63 / 7e-11 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041763 [exp] 632 / 0 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 175 / 4e-48 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10003969 [exp] 161 / 4e-46 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 157 / 2e-42 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10005320 [exp] 142 / 1e-38 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10019755 [exp] 140 / 4e-37 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10031716 [exp] 117 / 1e-28 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016369 [exp] 96 / 1e-21 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10037072 [exp] 74 / 1e-14 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121000 [exp] 605 / 0 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 162 / 3e-46 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 162 / 7e-46 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G054800 [exp] 142 / 1e-37 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.015G129500 [exp] 140 / 2e-36 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.010G158800 [exp] 87 / 4e-19 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 69 / 5e-13 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 66 / 6e-12 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 64 / 3e-11 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 62 / 1e-10 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028315 pacid=23166020 polypeptide=Lus10028315 locus=Lus10028315.g ID=Lus10028315.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCATGTGCAGCTGTATCGTCGTCCCTAAGGTCAGAGCTATTCAATTCCGGAGCTACCCGATTAACCGCGCCAACGAGGCTGAACCCTAACA GAAGTAGATGTGAAATTAATAGGAGAGGGTTAGCAATCAAGGGAATTGTGGCTTCAAGCATTTCAGCTGCTATGGCTACCGAGTCAAAGGATCAAGGAGT TGAGAGATTGCCCTTCAAGCCAGAAGGCTACAATTTTTGGACATGGAAAGGTCACAGGATACATTATGTTGTCGAAGGCGAAGGTCCTCCTATTGTTCTA GTTCATGGCTTTGGTGCTTCTGCTTTCCATTGGAGATACAATATACCTGAGTTGGCGAAGAAGTACAAAGTTTATGCCATAGACTTGCTAGGTTTCGGAT GGAGTGAGAAAGCACTAGTTGACTACGATGCCATGATATGGAAGGATCAACTAGTGGATTTCATGAAGCAGATAGTGAAAGAGCCAGCAGTTTTAGTGGG AAACAGCCTTGGAGGATTCACTGCTTTGATTTCCGCAGTGGGGTTGCCTGAACAAGTTATTGGAGTTGTACTGCTTAATTCAGCTGGGCAGTTTGGAAAT CCAAACGCGGAAACCAAGGAGTCTGAAGAATCTTCACTACAGAAGTATCTTCTGAAACCAGTCAAGGAAGTGTTTCAACGCATTGTACTAGGCTTTTTGT TCTGGCAAGCAAAGCAACCAGCTCGTGTGGAGTCTGTCTTAAAGAGTGTTTATGTAAACAAATCCAATGTGGATGACTATCTTGTTAAATCAATCATCCA ACCAGCAGCAGATCCAAATGCCGGAGAAGTATATTACAGATTGATGTCGCGATTCATGGTAAACCAAACAACCTACACATTGGACAGTGCGTTGAGTAAA CTGAGATGTCCACTTCTGTTGATATGGGGAGACTTGGACCCATGGGTTGGTCCTGCAAAGGCAAGAAGAATCAAGGAGTTCTATCCAAATACAACAGTAG TGAACTTGCAGGCTGGTCATTGCCCCCATGACGAAGTTCCCGAGCTTGTTAATAAAGCTTTAATGGACTGGCTACCTTCTCTAAAACCAGAACCCTCTCT CCAGACAATGTAA
AA sequence Show only first row Show all	>Lus10028315 pacid=23166020 polypeptide=Lus10028315 locus=Lus10028315.g ID=Lus10028315.BGIv1.0 annot-version=v1.0 MSSSCAAVSSSLRSELFNSGATRLTAPTRLNPNRSRCEINRRGLAIKGIVASSISAAMATESKDQGVERLPFKPEGYNFWTWKGHRIHYVVEGEGPPIVL VHGFGASAFHWRYNIPELAKKYKVYAIDLLGFGWSEKALVDYDAMIWKDQLVDFMKQIVKEPAVLVGNSLGGFTALISAVGLPEQVIGVVLLNSAGQFGN PNAETKESEESSLQKYLLKPVKEVFQRIVLGFLFWQAKQPARVESVLKSVYVNKSNVDDYLVKSIIQPAADPNAGEVYYRLMSRFMVNQTTYTLDSALSK LRCPLLLIWGDLDPWVGPAKARRIKEFYPNTTVVNLQAGHCPHDEVPELVNKALMDWLPSLKPEPSLQTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	4.5	0.8510
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	4.8	0.8827
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	13.4	0.8086
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	14.5	0.7898
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	15.9	0.7083
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	19.9	0.8440
AT5G12470			Protein of unknown function (D...		Lus10019744 [exp]	24.6	0.7462
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	26.4	0.8250
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	27.0	0.7675
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	28.6	0.7972

Compare expression of checked genes

Lus10028315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.