Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 249 / 3e-77 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 71 / 6e-13 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 59 / 3e-09 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G77470 56 / 4e-08 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041764 [exp] 837 / 0 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10019391 [exp] 245 / 1e-75 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 199 / 2e-57 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023809 [exp] 114 / 7e-29 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10025689 [exp] 68 / 5e-12 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 66 / 2e-11 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10023810 [exp] 64 / 6e-11 AT5G27740 72 / 1e-14 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10018144 [exp] 61 / 1e-09 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120901 [exp] 590 / 0 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 580 / 0 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.019G040000 [exp] 228 / 3e-69 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G093400 [exp] 138 / 3e-35 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G181300 [exp] 73 / 9e-14 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 62 / 3e-10 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 62 / 4e-10 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.007G022950 [exp] 48 / 1e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10028316 pacid=23166164 polypeptide=Lus10028316 locus=Lus10028316.g ID=Lus10028316.BGIv1.0 annot-version=v1.0 ATGGACCTGGACAGCAACTATTTCCCTACCTTGAACCGAACCAGGAGCGGCTACGAGCCATCCGATGTCGAAACCGATTGGAAAGAAAGCCCATTCCGTG GCAACAACAACAACAACTACAGAGCAGGTTTTGACTCAGACACTGACTTGGATTTACCATCTGGAAGAAACCCCCCAACTTCCAAAAGACAACCCAGGAG ATTTGATGCTGCTACTGATGATTTACCTTCTTCCTCTGAAGGAGGAGCTTCAATCTCCAGCAGCTTATCTCGCAGGAAGACCAAGTCACCTCACAAGAAC CCTCGACCCAGGTCAGCTAGCGCAACCAGGGTCAGGACCCGGGATAAAGTGGTGGTGCGGAAGAGGAGATCACACCCACCTTCAAGGTTCGAGAAGGTTA ACTTGGATCACAAGGCATCAACGAGGTCTTCTAATTCGACAAGTTCAGGATCGCGAACCACCACGAGCTCTAACTCCATCCACAGCAGTAATGGGAAGCT CAGTAGTGACACTAGTAAAGTGAGTGATGTAAGCGGCAGAACAAGTGACAGCACCAAGGCATTTGTGGCTAACAGGAAGAAGTCGTCCCAGTCCGATTCT AATTGGCTTTCTTGCATCAAAGGAAGGAGTTGTAGAGTAAAGAACTCGCCTGAGAAGCAAAGATTGGACGAGTCTTCGTTCATCGCGAGGGCTAATGTCA TCGAGAACTTGACGCAGTTTTGGGCTGATAAGTATCAGCCAAGCTCGCTGAAAGGGTTCACTTACCATAAACAAGAGGCTCAACTTCTCAGACAACTTGT GTCTCGTGAGAATATACCTCATATCTTGTTTAAAGGACCGTCAATCTCTGGGAAGACAGCATTGTTGATGGCACTTCTTGGAGACATATTTGGTGATGCT TGTCTCAACATGTCACACGACTTGAGATTCTTCCAGGCCCAGGAGAAAAAGGGAGCACAGGTGGTAGTTCCAGTAACATCAAGCGCTCATCATGTGGAGC TCAACGTGAAATCTGAACCTAATGCCATGAGTGCCTTGATGGGTTTGGTGAAAGAGATCAGCAATGCCTACTCACTAACTCCAGATATCAGCACGATAAA CCCGAGGCCGGAATATAAAGTGATAGTTCTTTATGAGGCAGACAGAGCACCAGAGAATATCCAGCACTTGATCAAATGGATCATGGACTGTTACACTGAT TGTTGTAAGCTAATCCTCTGCTGTGACGATGATGTGGACGTGCTCGAATCTGTCAGAAATCGATGCAAAGTTATAAATGTCAATGCTCCCGCCACTCATG AAATCATGGAGGTTCTTGTTCATATAGCGAAGAAAGAAGAGTTTGATCTACCGATGAATTTCGCTGCTAAGATTGCCACAAAATCCAAGGACTTGAGAAG GGCAATCATGGCACTTGAAGCTTGCAGAGCACACAATTATCCTTTTGCTAATGATCAGCCGATTCCAATCAGTTGGGAAGAGGTGTTGGTCGAAATTGCC AACGAAATCATGGCTGATCCATCCCCTAAGAGGCTGTTTCTGGTAAGAGGGAAGTTGCAGAAGCTTCTTGTGGATTTTGTGCATCCTCTACTTATCCTTC AGAAACTTGTGGAACAATTCTTAAAGGAGATGCCGTCCAGTTCAAAAAGAGAGCTTTACTATTGGAAAAGCTACTATGAAAAGCGACTCCCAACAGGCAC AACCGCCTTGCTCAAACTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACAGGAAGAGTATCGGGAGTCCCCAGTTCTGA
AA sequence Show only first row Show all	>Lus10028316 pacid=23166164 polypeptide=Lus10028316 locus=Lus10028316.g ID=Lus10028316.BGIv1.0 annot-version=v1.0 MDLDSNYFPTLNRTRSGYEPSDVETDWKESPFRGNNNNNYRAGFDSDTDLDLPSGRNPPTSKRQPRRFDAATDDLPSSSEGGASISSSLSRRKTKSPHKN PRPRSASATRVRTRDKVVVRKRRSHPPSRFEKVNLDHKASTRSSNSTSSGSRTTTSSNSIHSSNGKLSSDTSKVSDVSGRTSDSTKAFVANRKKSSQSDS NWLSCIKGRSCRVKNSPEKQRLDESSFIARANVIENLTQFWADKYQPSSLKGFTYHKQEAQLLRQLVSRENIPHILFKGPSISGKTALLMALLGDIFGDA CLNMSHDLRFFQAQEKKGAQVVVPVTSSAHHVELNVKSEPNAMSALMGLVKEISNAYSLTPDISTINPRPEYKVIVLYEADRAPENIQHLIKWIMDCYTD CCKLILCCDDDVDVLESVRNRCKVINVNAPATHEIMEVLVHIAKKEEFDLPMNFAAKIATKSKDLRRAIMALEACRAHNYPFANDQPIPISWEEVLVEIA NEIMADPSPKRLFLVRGKLQKLLVDFVHPLLILQKLVEQFLKEMPSSSKRELYYWKSYYEKRLPTGTTALLKLEEFVAKFMSIYRKSIGSPQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	0	1
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	12.2	0.9728
					Lus10026149 [exp]	17.5	0.9723
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	22.0	0.9722
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	24.8	0.9721
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Lus10026793 [exp]	25.8	0.9402
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	29.1	0.9705
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	31.2	0.9687
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	34.4	0.9684
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	37.0	0.9683
					Lus10008326 [exp]	38.7	0.9682

Compare expression of checked genes

Lus10028316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.