Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39220 225 / 3e-75 ATRER1A Rer1 family protein (.1) AT2G21600 218 / 1e-72 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT2G18240 201 / 1e-65 Rer1 family protein (.1.2) AT2G23310 190 / 3e-61 ATRER1C1, ATRER1C Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041765 [exp] 316 / 9e-111 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10041766 [exp] 255 / 3e-87 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10028319 [exp] 255 / 4e-87 AT2G21600 249 / 4e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10011502 [exp] 207 / 6e-68 AT4G39220 258 / 3e-88 Rer1 family protein (.1) Lus10019323 [exp] 205 / 5e-67 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10002889 [exp] 157 / 1e-49 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 107 / 2e-30 AT4G39220 112 / 7e-33 Rer1 family protein (.1) Lus10015498 [exp] 94 / 8e-24 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034200 [exp] 249 / 8e-85 AT2G21600 265 / 3e-91 endoplasmatic reticulum retrieval protein 1B (.1) Potri.005G228900 [exp] 243 / 3e-82 AT2G21600 235 / 1e-79 endoplasmatic reticulum retrieval protein 1B (.1) Potri.004G156900 [exp] 224 / 7e-75 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.009G118500 [exp] 223 / 2e-74 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.007G047800 [exp] 209 / 6e-69 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.005G141700 [exp] 191 / 7e-62 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2) Potri.004G156800 [exp] 172 / 2e-54 AT4G39220 251 / 6e-86 Rer1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [flax] [poplar] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Lus10028317 pacid=23165989 polypeptide=Lus10028317 locus=Lus10028317.g ID=Lus10028317.BGIv1.0 annot-version=v1.0 ATGGCGGAACCGCGAAGTGAAGGCGTCCCCCAGCTCGTCAAGTGGAGCAGCGACTTCTCCAGGGTGTTCCAGCACTATCTCGACAGATCGGTGCCTCAGC CGATGCTCAGGTGGATAGGAACCCTTGCGGTGGCCATTCTCTACGCCTTGCGGATTTACTATGTCCAAGGGTTTTACGTCGTCTCCTACGGGCTCGGGAT CTACATTTTGAATCTGCTGATTGGATTCCTGTCCCCAAAGGTTGATCCGGAGCTTGAATCGGTCGATGGACCTTCCCTACCGACCAAGACTTCCGATGAG TTCAAGCCTTTTGTTCGCCGACTGCCTGAGTTCAAATTCTGGTATGCGATCACCAAGGCGTTCCTAGTTGCTCTGGTCATGACCTTTTTCTCTGTGCTGG ACGTACCTGTGTTCTGGCCGATCTTAGTGATTTACTGGATTGTTCTCTTTGTCCTCACAATGAGAAGACAAGTCATGCATATGATCAAGTATAAGTATAT TCCGTTTGACTTGGGGAAGAAGGGAGCAAGCGTCCTGAAAGCAGCAGCAAGCCGCGGGACTGAAGCTCCAGAACAATGGGAGGAATCCACCAATACACGT AACGCAGCTGATGAAAACTGGAGATGA
AA sequence Show only first row Show all	>Lus10028317 pacid=23165989 polypeptide=Lus10028317 locus=Lus10028317.g ID=Lus10028317.BGIv1.0 annot-version=v1.0 MAEPRSEGVPQLVKWSSDFSRVFQHYLDRSVPQPMLRWIGTLAVAILYALRIYYVQGFYVVSYGLGIYILNLLIGFLSPKVDPELESVDGPSLPTKTSDE FKPFVRRLPEFKFWYAITKAFLVALVMTFFSVLDVPVFWPILVIYWIVLFVLTMRRQVMHMIKYKYIPFDLGKKGASVLKAAASRGTEAPEQWEESTNTR NAADENWR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	1.0	0.8451
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	1.7	0.7767
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	3.9	0.7703
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	4.5	0.7771
AT5G51150			Mitochondrial import inner mem...		Lus10043005 [exp]	7.5	0.7591
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	10.4	0.7752
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	13.0	0.7684
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	14.2	0.7678
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	17.0	0.7214
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	18.2	0.7434

Compare expression of checked genes

Lus10028317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.