Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13160 532 / 1e-178 ARM repeat superfamily protein (.1) AT4G31520 410 / 7e-133 SDA1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006236 [exp] 888 / 0 AT1G13160 822 / 0.0 ARM repeat superfamily protein (.1) Lus10036950 [exp] 863 / 0 AT1G13160 790 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182900 [exp] 759 / 0 AT4G31520 632 / 0.0 SDA1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05285 [flax] [poplar] SDA1 SDA1 PF08158 [flax] [poplar] NUC130_3NT NUC130/3NT domain
Representative CDS sequence Show only first row Show all	>Lus10028318 pacid=23166177 polypeptide=Lus10028318 locus=Lus10028318.g ID=Lus10028318.BGIv1.0 annot-version=v1.0 ATGTCAACCGGCAACCACCATACCTCCGGCGGAGAGATTTCGGAGTCCGCGCCTGGGGAGATCTCGGAGAAGCTCAGCCTACCGTCGCTCCAATCCAAGA TGAAGATCGACCCGGAAGGCTACACGACGGAGCTTGGACTCATCTACAGCCGGTTCAACTGCGCCCTCGAAATGTTCCAGCAGCAGGCCGCTCTAAGCTT CACCTCCAGCGTGTGCGCCGACCCTACCATCGCCAAGGAACTCGGCGAGCGCACCATGTTCCTGTCTCAGGTGGCGCCGTTCTACTCCAAGGAGCTAGCC AGGTTCCCCGGACAACTAGTTGATTTTCTAAAATCGTCGGCCAGGTCGCTTCCGTTTGGACTCAGGGGTAACGTCACTCAAGCTCTCATTCTCCTCGTCA ATCGAAAGATGGTTGATATAAAGAATTCTTTGGCGTTGTTTATGGAGCTTCAAACGGTTGGAGATAGGAACTTGAGGATTTTGGCGTTCTCTCACGTTGT CAATAGTATTAAGAGAATGAATAAGAAGCATAAGAACGAGGCAAAGAATCGTACTCTTCAGAATATCCTGTTTACAATGATGCAGCAAGAGGATGAACCT TTGGCGAAAAGAGCGCTCATTACTCTCTGTGAGCTTCATAGGAGAAAGGTTTGGTTTGATGATAGAACTGCTAATGCGATTTGCATGGCTTGTTTCCATT CTTCGTCAAGGATCATGAATGCTGCTTTGTCGTTTGTGTTGGATTTTGAGAAGATGCAAGATGATCACAACAGTGACAGTAAGGATATGAGCAGCGACGA TGATGCCAATCCGCGTCATGCTCAAGTTGCCATTAACAAAGAGTCTATTTTTAAGGCAACTAAAACGGGTACTTCAGTTGTTAGTAAGAAGAAAAAGAAA GCAAAGTTGGAGTGTGTTGTCCGTAGCATGGAAAGCCAGCAGCGCTTGGAATCAGAGAAAACCGGTTCGAATTATTATTCACCTCTTAACCATCTCAAGG ATGCTCAGGGGTTTGCTGAGAAACTGTTCTCTCGTCTTAACACTTGCAATGAACGTTTTGAGGTTAAGATGATGCTGATGAGAGTCATTGCTCGAACAAT TGGGCTGCACAATTTGATTTTGTTGAACTTCTATCCTTTCCTGCAAAAGTATTGTCAGAGGTCATCTAAATTTCTTCAGCCACATCAAAGAGATGTCACT AGTTTGCTTGGTGCAGCGGTTCAGGCTTGTCATGACATGGTTCCTCCTGATGCAGTTGAACCTTTGTGTAGACAAATAGTAAATCAGTTCGTACATGATC ATTCCCATCCAGAGGCCATTTCTGTTGGACTTAATGTCATCAGGGAAATATGTCTGCGAATTCCTTTGTTGATGACCGAAGACTTGCTTCAGGATCTTGT GTTATACAAGAAACAACATGAGAAAGCTGTTTCTGCCGCTGCTCGTTCACTGATGGTCTTATTCAGAGAGATTTGTCCATCACTTTTGGTTAAGAAGGAT AGAGGTAGACCCATAGACCCAGAGGCAAAGCCGAAAGCGTGTGGAGAAAATCATGTAGACAATGCTGTTCCTGGAATTGAATTACTGGACGAGGGTGCTG ATACCGACGAGAGGGATGAAGATGCTAAAGATGATGGAGACGATTCTCAGCCAGATGATCACGAATTATTTGGAAGTGATGATGAGGAAGATAGAATTGA TAATGGCGATTTACGAGCTGGTTTGGATGACAGCGACAGTGACGACAATGTGGATGAAATTGGGAGTGGGAAAGATGAGGGAGAGGAGGAAGACAATGAC GGAGTTGAGGAAGAAGATGAAGAAGAGTCTAGTGACCCGCAGGATTTGGATGAGGTTGAAGTAAACAAATCTAAATCAAATAAGAGAAAGCGATCAGATT TCAATGGAGATGGTTTCGTTTCTCAAGAGGATTTCAAAAGGATTAGGGAACTGCAGGCGAAAATTGCGGCAACTCAACATGGCTTCAAGCTTCCATCATC TGACCAATTATCTATGAAGCCTATGGATCCTTCCAAGCTTGAGGCTCACATCCGGCACAAAATGAACAAGGAAGAACGGCTAGAAATGGTGAAGGCCGGG AGGGAAGATAGAGGAAAGTACCAAGCTCGAAGTTCTATTAGAAAGAAGAAGACCGGAGGTCTAAGCAATCAGCAAAAGAACCACAAGAAGAAAATGCCAC CGGCCGCAAAGCGTTTAACGATCGTCAGAAACCGAGCAAACAAACGAAAGAAGAGCGATCGCTCGGGCAAGCAGTTCCGTGGAAAGAAAGCATGGAAGTA A
AA sequence Show only first row Show all	>Lus10028318 pacid=23166177 polypeptide=Lus10028318 locus=Lus10028318.g ID=Lus10028318.BGIv1.0 annot-version=v1.0 MSTGNHHTSGGEISESAPGEISEKLSLPSLQSKMKIDPEGYTTELGLIYSRFNCALEMFQQQAALSFTSSVCADPTIAKELGERTMFLSQVAPFYSKELA RFPGQLVDFLKSSARSLPFGLRGNVTQALILLVNRKMVDIKNSLALFMELQTVGDRNLRILAFSHVVNSIKRMNKKHKNEAKNRTLQNILFTMMQQEDEP LAKRALITLCELHRRKVWFDDRTANAICMACFHSSSRIMNAALSFVLDFEKMQDDHNSDSKDMSSDDDANPRHAQVAINKESIFKATKTGTSVVSKKKKK AKLECVVRSMESQQRLESEKTGSNYYSPLNHLKDAQGFAEKLFSRLNTCNERFEVKMMLMRVIARTIGLHNLILLNFYPFLQKYCQRSSKFLQPHQRDVT SLLGAAVQACHDMVPPDAVEPLCRQIVNQFVHDHSHPEAISVGLNVIREICLRIPLLMTEDLLQDLVLYKKQHEKAVSAAARSLMVLFREICPSLLVKKD RGRPIDPEAKPKACGENHVDNAVPGIELLDEGADTDERDEDAKDDGDDSQPDDHELFGSDDEEDRIDNGDLRAGLDDSDSDDNVDEIGSGKDEGEEEDND GVEEEDEEESSDPQDLDEVEVNKSKSNKRKRSDFNGDGFVSQEDFKRIRELQAKIAATQHGFKLPSSDQLSMKPMDPSKLEAHIRHKMNKEERLEMVKAG REDRGKYQARSSIRKKKTGGLSNQQKNHKKKMPPAAKRLTIVRNRANKRKKSDRSGKQFRGKKAWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	0	1
AT2G40430			unknown protein		Lus10037530 [exp]	1.0	0.8929
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	2.0	0.8799
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	4.9	0.8689
AT1G66310			F-box/RNI-like/FBD-like domain...		Lus10034161 [exp]	4.9	0.8358
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	8.5	0.8651
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	8.9	0.8466
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	9.2	0.8593
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	12.4	0.8453
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	13.7	0.8165
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	14.2	0.8529

Compare expression of checked genes

Lus10028318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.