Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21600 248 / 8e-85 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT4G39220 246 / 4e-84 ATRER1A Rer1 family protein (.1) AT2G18240 246 / 2e-83 Rer1 family protein (.1.2) AT2G23310 209 / 2e-69 ATRER1C1, ATRER1C Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041766 [exp] 360 / 4e-129 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10041765 [exp] 295 / 8e-103 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10028317 [exp] 285 / 2e-99 AT4G39220 254 / 8e-87 Rer1 family protein (.1) Lus10011502 [exp] 225 / 2e-75 AT4G39220 258 / 3e-88 Rer1 family protein (.1) Lus10019323 [exp] 224 / 5e-75 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10002889 [exp] 146 / 1e-45 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 115 / 5e-34 AT4G39220 112 / 7e-33 Rer1 family protein (.1) Lus10015498 [exp] 64 / 8e-13 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034200 [exp] 284 / 5e-99 AT2G21600 265 / 3e-91 endoplasmatic reticulum retrieval protein 1B (.1) Potri.005G228900 [exp] 278 / 1e-96 AT2G21600 235 / 1e-79 endoplasmatic reticulum retrieval protein 1B (.1) Potri.004G156900 [exp] 247 / 1e-84 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.009G118500 [exp] 246 / 3e-84 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.007G047800 [exp] 236 / 6e-80 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.005G141700 [exp] 214 / 2e-71 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2) Potri.004G156800 [exp] 194 / 2e-63 AT4G39220 251 / 6e-86 Rer1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [flax] [poplar] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Lus10028319 pacid=23166077 polypeptide=Lus10028319 locus=Lus10028319.g ID=Lus10028319.BGIv1.0 annot-version=v1.0 ATGGAGGACGCAGGAGGAGGAAGTGAAACCGTGCCGCCGCTCGTCAAGTGGAAAGCCGACTTCTCCAGGGCGTTCCAGTACTATCTCGACAGATCCGCGC CTCTCCCACTGCAGAGGTGGCTGGGGAGTCTGGTGGTGGCGCTGATATATGTCTGGCGGGTTTACTCTATCCAGGGTTTCTATGTCATTTCGTACGGGCT TGGGATCTACGTCTTGAATCTGTTGATCGGTTTCCTATCTCCGAAGGTTGATCCCGAGCTTGAAGCTCTTGAATCACTGGACGGCGCTTCCTTGCCGACT AAAACGTCTGATGAGTTCAGGCCGTTCGTTCGCCGGCTTCCTGAATTCAAGTTCTGGTATGCCATCACCAAGGCTTTTATAATTGCATTCGTCATGACCT TTTTCTCTGTGCTGGATGTGCCGGTTTTCTGGCCGATCCTCCTGATTTATTGGATTGTTCTCTTTGTTCTCACAATGAAGAGACAAATTCTGCATATGAT CAAGTATAAGTATGTGCCGTTCGACTTGGGAAAGAAGGTCAGTTAG
AA sequence Show only first row Show all	>Lus10028319 pacid=23166077 polypeptide=Lus10028319 locus=Lus10028319.g ID=Lus10028319.BGIv1.0 annot-version=v1.0 MEDAGGGSETVPPLVKWKADFSRAFQYYLDRSAPLPLQRWLGSLVVALIYVWRVYSIQGFYVISYGLGIYVLNLLIGFLSPKVDPELEALESLDGASLPT KTSDEFRPFVRRLPEFKFWYAITKAFIIAFVMTFFSVLDVPVFWPILLIYWIVLFVLTMKRQILHMIKYKYVPFDLGKKVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	0	1
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	1.7	0.8938
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	6.0	0.8427
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	7.5	0.8285
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	12.2	0.7999
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	13.6	0.8530
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	13.6	0.8414
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	15.3	0.8336
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	16.3	0.8307
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	17.9	0.8138
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	19.0	0.8095

Compare expression of checked genes

Lus10028319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.